Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20293
(563 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 4e-25
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.0
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7) 29 2.6
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 2.6
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07) 28 6.1
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2) 28 6.1
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8) 27 8.0
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 111 bits (267), Expect = 4e-25
Identities = 50/69 (72%), Positives = 61/69 (88%)
Frame = +3
Query: 57 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236
MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1 MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60
Query: 237 HYKGQQLAK 263
H+K QQ+ K
Sbjct: 61 HFKSQQVGK 69
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +2
Query: 254 VGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGR 433
VGKV+QVYRKK+V++I+RIQREKANGAT VGIHPSK IVKLK++KDRK ILDR+ + +
Sbjct: 67 VGKVIQVYRKKWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSK 126
Query: 434 LAALGK 451
LA GK
Sbjct: 127 LAEKGK 132
>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.9 bits (69), Expect = 0.37
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 57 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 209
MK + Q+ RK+ K H P HIR+ S + K +R+ N + P IRK
Sbjct: 1 MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 297 YTTNFXRYTCITLPTVGLCSVHVQPELHR 211
+ T RYTC+ LP + ++QP + R
Sbjct: 686 HRTKLSRYTCLVLPEDSISQKYIQPNIER 714
>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4248
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 328 WCNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 492
W N IC ++C C+V DE N + ++ G TW R +R + G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577
>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
Length = 828
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 419 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLHHWP--FLFESSQCIQQTFXD 276
C G + + ST + L+G+ CR M+L HWP F + + + +T D
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWFSLDELESVDETSKD 375
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 502 LRGLHGCGSFLGVFTLVFAKCSQS 431
L GLH CG + VFAKC Q+
Sbjct: 72 LVGLHPCGDLVPTMLKVFAKCDQA 95
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 512 NHLFKRPPWLWQFPRCIY 459
NH WLWQ P C Y
Sbjct: 495 NHTANETEWLWQHPECSY 512
>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
Length = 717
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 303 SMYTTNFXRYTCITLPTVGLCSVHV 229
S++ TN RY TLP V SVH+
Sbjct: 71 SVHITNCSRYQVFTLPIVHFISVHI 95
>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
Length = 606
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 63 FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 215
F+ S +K+ +R+F +HI + + +S SK+ ++ K + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174
>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
Length = 586
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 116 CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 211
CS K ++ L+ + GT KI+ K HA+S++
Sbjct: 72 CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103
>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 460 TLVFAKCSQSALCSAIEDCFAVFI 389
T+ + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,465,280
Number of Sequences: 59808
Number of extensions: 342365
Number of successful extensions: 1026
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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