Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20293
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)           110   5e-25
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S ...   107   7e-24
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   6.5  
At3g16810.1 68416.m02147 pumilio/Puf RNA-binding domain-containi...    27   6.5  
At4g02110.1 68417.m00282 BRCT domain-containing protein contains...    27   8.7  
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica...    27   8.7  

>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
          Length = 146

 Score =  110 bits (265), Expect = 5e-25
 Identities = 51/66 (77%), Positives = 60/66 (90%)
 Frame = +3

Query: 57  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236
           MKFN +V+SSRRKNRK HF+APS +RRVLMSSPLSK+LR K NV+SMPIRKDDEVQVVRG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 237 HYKGQQ 254
            +KG++
Sbjct: 61  TFKGRE 66



 Score = 87.0 bits (206), Expect = 8e-18
 Identities = 40/68 (58%), Positives = 56/68 (82%)
 Frame = +2

Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436
           GKVMQVYR+K+V++IERI REK NG+T  VG++ S  +I KL+++KDRK++L+R+A GR 
Sbjct: 67  GKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGR- 125

Query: 437 AALGKDKG 460
           AA  K+KG
Sbjct: 126 AAADKEKG 133


>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S
           RIBOSOMAL PROTEIN L26, Brassica rapa, EMBL:BRD495
          Length = 146

 Score =  107 bits (256), Expect = 7e-24
 Identities = 49/66 (74%), Positives = 59/66 (89%)
 Frame = +3

Query: 57  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 236
           MK+N +VTSSRRKNRK HF+A S  RRV+MSSPLS +LRQK+NV+SMPIRKDDEVQ+VRG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 237 HYKGQQ 254
            YKG++
Sbjct: 61  TYKGRE 66



 Score = 93.5 bits (222), Expect = 9e-20
 Identities = 44/68 (64%), Positives = 57/68 (83%)
 Frame = +2

Query: 257 GKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRL 436
           GKV+QVYR+K+V++IERI REK NG T  VGI PSK VI KL+++KDRK++L+R+AKGR 
Sbjct: 67  GKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGR- 125

Query: 437 AALGKDKG 460
           AA  K+KG
Sbjct: 126 AAADKEKG 133


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 82   PQEGKTGRGISVLLHI 129
            P +G TG GISVLLH+
Sbjct: 1408 PFQGSTGSGISVLLHL 1423


>At3g16810.1 68416.m02147 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile:PF00806 Pumilio-family RNA
           binding domains
          Length = 641

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = +3

Query: 42  AKSDRMKFNKQVTSSRRKNRKRHFSAPSHIRRV---LMSSPLSKELRQKFNVKSMPIRKD 212
           +K +R    K++T +R+K RK H++    +  +   +    + KE R K   +++   K 
Sbjct: 62  SKKERRVQAKELTEARKKKRKPHYNLEQELVSLWEKMRRRNIGKEDRSKLISEAIRKMKG 121

Query: 213 DEVQVVRGHYKG---QQLAK*CRCIXKSLLYT 299
              ++   H      Q   K C    K +L+T
Sbjct: 122 KVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFT 153


>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
           Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 1293

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 36  VAAKSDRMKFNKQVT---SSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIR 206
           VA K+     +K  T   +S  ++ +RH S  ++ R+ L  SP +  L ++ + ++  +R
Sbjct: 258 VANKTPEQGMSKMETDGSTSINRSIRRHSSLATYSRKTLQRSPETDTLGKESSGQNRSLR 317

Query: 207 KDDE 218
            DD+
Sbjct: 318 MDDK 321


>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
           to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
           (5320), 1865-1868 (1997))
          Length = 933

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = -1

Query: 167 FLRQGRGHQHSPYM*RSTEMPLPVFPS*GSHLLVELHSVALRCNAKTPRLF 15
           +  QG   Q +    +  +  +P +PS    L+ +LH+V +  + +T  ++
Sbjct: 44  YFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVY 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,782
Number of Sequences: 28952
Number of extensions: 231854
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)