Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20292
         (444 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P40866 Cluster: Stage V sporulation protein AA; n=1; Ba...    35   0.91 
UniRef50_Q54HR5 Cluster: Putative uncharacterized protein; n=1; ...    33   2.1  
UniRef50_Q057F1 Cluster: Cytochrome o ubiquinol oxidase operon p...    33   3.7  
UniRef50_Q23QC0 Cluster: Putative uncharacterized protein; n=1; ...    32   4.8  
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:...    32   4.8  
UniRef50_A6TSI2 Cluster: Fumarate reductase/succinate dehydrogen...    31   8.5  
UniRef50_Q4XKW0 Cluster: Putative uncharacterized protein; n=1; ...    31   8.5  

>UniRef50_P40866 Cluster: Stage V sporulation protein AA; n=1;
           Bacillus subtilis|Rep: Stage V sporulation protein AA -
           Bacillus subtilis
          Length = 200

 Score = 34.7 bits (76), Expect = 0.91
 Identities = 15/46 (32%), Positives = 30/46 (65%)
 Frame = +3

Query: 204 IILDILEFVRALNIRQFTLKHNTSGGAD*ILALPRKSQNSQQISFI 341
           +ILDI++ +RA++++  T+   T GGA+ I+ +  + +N   + FI
Sbjct: 56  VILDIIQVLRAIHLQDPTIDVQTVGGAETIVEIQYRKRNLSTVLFI 101


>UniRef50_Q54HR5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1036

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +3

Query: 147 LFTESLTNLIFGSLLNYFKIILDILEFVRALNIRQFTLKHNTSGGAD*ILALPRKSQNSQ 326
           L+ + +TN ++     YF ++LD  EF    ++ QF+   NT  G   +  + R + N +
Sbjct: 123 LYYDDITNSVWMVRNRYFSLLLDKFEFSLKFDLIQFSQILNTVNGYV-LCTIARSAGNEK 181

Query: 327 QISFILTATINFAL 368
            + F+L +  N  L
Sbjct: 182 LLDFLLDSCQNVFL 195


>UniRef50_Q057F1 Cluster: Cytochrome o ubiquinol oxidase operon
           protein; n=1; Buchnera aphidicola str. Cc (Cinara
           cedri)|Rep: Cytochrome o ubiquinol oxidase operon
           protein - Buchnera aphidicola subsp. Cinara cedri
          Length = 107

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 102 LYFYFFLS*KPYCFFLFTESL-TNLIFGSLLNYFKIILDI 218
           ++FYFFL  K Y FF   + L  NLI   LL YFK   +I
Sbjct: 32  VFFYFFLLYKDYYFFQKNKYLFYNLIIIQLLLYFKYFFEI 71


>UniRef50_Q23QC0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 872

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 51  QSTLKCTKSRQTDLEMQLYFYFFLS*KPYCFFLFTESLTNLIFGSLLNYF 200
           Q+ L+    + TDL + LYF+  +S  P  F L T    +L FGS+L+ F
Sbjct: 37  QNILESANQKNTDL-IHLYFFQNMSQYPNAFLLLTMIPISLKFGSILSDF 85


>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
           Ymf77 - Tetrahymena pigmentosa
          Length = 1260

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 64  NAQNQDKQILRCNYIFIFFFLKNLIVFFYSRN-H*QISFLGVYLIISKLFWTFW 222
           N  N++++++   +  IFFF+  + +  +S N H  I++  VYL+  KLFW  +
Sbjct: 19  NEANENRELILI-FFRIFFFISTIYILLFSYNIHIIITYPLVYLL-DKLFWNIF 70


>UniRef50_A6TSI2 Cluster: Fumarate reductase/succinate dehydrogenase
           flavoprotein domain protein precursor; n=1; Alkaliphilus
           metalliredigens QYMF|Rep: Fumarate reductase/succinate
           dehydrogenase flavoprotein domain protein precursor -
           Alkaliphilus metalliredigens QYMF
          Length = 616

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 184 VYLIISKLFWTFWSLYGHSTSDSSPSNTTQAEGQTESWHYQESRRIHSR 330
           +YL++ +  W  WS+  H   +SSP+     + Q E ++  E   +  R
Sbjct: 442 IYLVMDQEAWDKWSVLAHGDENSSPAGRFTLDEQEEWFNTPEGTPVFRR 490


>UniRef50_Q4XKW0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 112

 Score = 31.5 bits (68), Expect = 8.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 67  AQNQDKQILRCNYIFIFFFLKNLIVFFYSRNH*QISFLGVYLII 198
           A++++K    C YI I+ +  +    F+S N   I+FL +Y+II
Sbjct: 38  AKDENKSTYMCTYIIIYVYKYSFA--FHSHNSLIINFLSIYMII 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,299,168
Number of Sequences: 1657284
Number of extensions: 6035624
Number of successful extensions: 19481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19448
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)