Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20292
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   2.9  
01_01_0529 + 3874865-3876285,3876352-3876367                           28   2.9  
07_01_0184 - 1304328-1304951,1305328-1305441,1305549-1305839,130...    28   3.9  
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196...    28   3.9  
05_06_0038 - 25100851-25101474,25101945-25102058,25102151-251024...    27   6.8  
02_02_0352 - 9271311-9271540,9272034-9272353,9272808-9273178           27   6.8  
01_06_0835 - 32312264-32312884,32313529-32313642,32313739-323140...    27   6.8  
10_07_0024 - 11964126-11964542,11965235-11966176,11966245-119662...    27   9.0  

>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
            28316548-28316615,28316693-28316757,28316922-28320162,
            28320239-28320301,28320756-28320824,28321020-28321055,
            28322035-28322280,28322531-28322569,28322695-28322816,
            28322921-28323004,28323100-28323235,28323486-28323535,
            28323620-28323756,28323863-28323951,28324847-28324954,
            28325080-28325163,28325841-28325888,28326036-28326153,
            28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 132  PYCFFLFTESLTNLIFGSLLNYFKIILDILE 224
            P C   F+ SL NL+  S ++ FK +LD +E
Sbjct: 1106 PLCHMEFSSSLANLVLSS-VDRFKTMLDFIE 1135


>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 308 SW*CQDSVCPSACVVFEGELSDVECPYKLQNVQNNFEII 192
           SW C+D        +   +L D++C  +L NVQ  F I+
Sbjct: 354 SW-CEDGTWREDATLDAAQLWDLDCENRLPNVQPEFPIV 391


>07_01_0184 -
           1304328-1304951,1305328-1305441,1305549-1305839,
           1305930-1306238,1306326-1307048
          Length = 686

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 94  RCNYIFIFFFLKNLIVFFYS 153
           + N IF+FF L+ LI+ FYS
Sbjct: 485 KANLIFLFFLLRKLILPFYS 504


>03_06_0109 -
           31717691-31718311,31719110-31719223,31719316-31719606,
           31719698-31720006,31720098-31720865
          Length = 700

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 94  RCNYIFIFFFLKNLIVFFYS 153
           + N IF+FF L+ LI+ FYS
Sbjct: 500 KANLIFLFFLLRKLILPFYS 519


>05_06_0038 -
           25100851-25101474,25101945-25102058,25102151-25102441,
           25102552-25102860,25103458-25104186
          Length = 688

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 100 NYIFIFFFLKNLIVFFYS 153
           N IF+FF L+ LI+ FYS
Sbjct: 489 NLIFLFFLLRKLILPFYS 506


>02_02_0352 - 9271311-9271540,9272034-9272353,9272808-9273178
          Length = 306

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 313 DFLGSAKIQSAPPLVLCLRVNCLMLSAR 230
           +FL S  +   PP VL L++NC ++  R
Sbjct: 169 EFLNSLTLNGLPPHVLKLKINCPIMLLR 196


>01_06_0835 -
           32312264-32312884,32313529-32313642,32313739-32314029,
           32314135-32314443,32315194-32315931
          Length = 690

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 100 NYIFIFFFLKNLIVFFYS 153
           N IF+FF L+ LI+ FYS
Sbjct: 492 NLIFLFFLLRKLILPFYS 509


>10_07_0024 -
           11964126-11964542,11965235-11966176,11966245-11966291,
           11966545-11966602,11968378-11968624,11970207-11970390,
           11970410-11970548,11970689-11970796
          Length = 713

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 379 LGHFNAKLIVAVKIKLICCEFCDFLGSAKIQSAPPLVLCLRV-NCLML 239
           LG F A  +V  ++ L    FC+ +G+ KI SA   +  LRV +C ML
Sbjct: 462 LGFFLAGCLVLERLDL---SFCNSIGALKIPSALRRLRSLRVRSCRML 506


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,546,736
Number of Sequences: 37544
Number of extensions: 151591
Number of successful extensions: 444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)