Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20292
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51551| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.99 
SB_21557| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_20131| Best HMM Match : RVT_1 (HMM E-Value=0.0049)                  27   5.3  
SB_24029| Best HMM Match : Kinesin (HMM E-Value=2.10195e-44)           27   7.0  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_51551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 88  ILRCNYIFIFFFLKNLIVFFYSRNH*QISFLGVYLIISKLFWTFWSLYGHSTSDSSPSNT 267
           I+ C Y+F    L+ L  + Y  N   + F+  Y +       +W  Y + + DS     
Sbjct: 299 IVGCGYVFRIKALRCLGYWDYVSNREHLDFITSYKVEYSFDRLYWISYSNGSKDSIERGY 358

Query: 268 TQAEGQTES 294
           T+ +G  ++
Sbjct: 359 TEFKGNFDA 367


>SB_21557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 226 LYGHSTSDSSPSNTTQAEGQTESWHYQESRRIHSRLVLF 342
           LYG+   D+SPS T  + G+T++   +E ++  S ++ F
Sbjct: 13  LYGNQAYDTSPSTTQVSIGKTQA-QAREIKQFRSLVIAF 50


>SB_20131| Best HMM Match : RVT_1 (HMM E-Value=0.0049)
          Length = 186

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 202 KLFWTFWSLYGHSTSDSSPSNTTQAEGQTESW 297
           +LF    +LY H TSD SPS+  Q   +  +W
Sbjct: 115 RLFADDCALYLHLTSDESPSHLQQPLNKLAAW 146


>SB_24029| Best HMM Match : Kinesin (HMM E-Value=2.10195e-44)
          Length = 534

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 263 FEGELSDVECPYKLQNVQNNFE 198
           +E  LS ++C  K +N++NNF+
Sbjct: 228 YEDTLSSLQCGSKARNIENNFK 249


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 337 KLICCEFCDFLGSAKIQSAPP 275
           KLI C+ C  + SAK QS PP
Sbjct: 400 KLITCKGCQEIVSAKTQSHPP 420


>SB_28157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 202 KLFWTFWSLYGHSTSDSSPSNTTQAEGQTESW 297
           +LF    +LY H TSD SPS+  Q   +  +W
Sbjct: 516 RLFADDCALYLHLTSDESPSHLQQDFNKLAAW 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,408,102
Number of Sequences: 59808
Number of extensions: 186933
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)