Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20292
         (444 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    32   0.40 
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    32   0.40 
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    32   0.40 
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    32   0.40 

>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
            homolog protein.
          Length = 3584

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 273  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 389
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2689 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2727


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 273  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 389
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 273  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 389
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
            protein.
          Length = 3583

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 273  SGGAD*ILALPRKSQNSQQISFILTATINFALKWPRTLR 389
            +G A  ILA+P + ++ Q    +L AT+N  L+ PR  R
Sbjct: 2688 AGAAKQILAMPTRQESEQDALGVLLATVNTLLQQPRVWR 2726


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,619,064
Number of Sequences: 53049
Number of extensions: 280166
Number of successful extensions: 860
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1438687674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)