Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20292
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p...    28   3.5  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z49072-3|CAA88881.2|  331|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    27   8.1  
U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    27   8.1  

>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 109 KYNCISRSVCLDFVHFNVDCWCNFNVRAW 23
           KY  ++ SV ++F HF + CW N +   W
Sbjct: 150 KYTILAFSVIMEFYHFYMCCW-NISSNLW 177


>Z93380-3|CAB07600.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.4 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 84  TDLEMQLYFYFFLS*KPYCFFLFTESLTNLIFGSLLNYF 200
           TD E++LYFY+  +      +  T S+ +L F  L++YF
Sbjct: 107 TDCEVELYFYYLTN------YFSTYSVFSLTFDRLISYF 139


>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
           protein F23B2.11 protein.
          Length = 1080

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +3

Query: 186 LLNYFKIILDILEFVRALNIRQFT 257
           LLN  +++ D+ EF++A+NIR  T
Sbjct: 667 LLNSLQMLYDLAEFIKAVNIRTGT 690


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 6   TNILSYHARTLKLHQQSTLKCTKSRQTDLEMQLYFYFFLS*KPYCFFLFTESLT 167
           T IL    RT+K  + + LK T S Q+D + ++  +  ++      F+ +E LT
Sbjct: 220 TTILILQLRTIKKRKANLLKSTSSNQSDNKFKMILWLTIT------FMLSEGLT 267


>Z49072-3|CAA88881.2|  331|Caenorhabditis elegans Hypothetical
           protein T24A11.2 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +3

Query: 60  LKCTKSRQTDLEMQLYFYFFLS*KPYCFFLFTESLTNLIFGSLLNYFKIILDILEFVRAL 239
           L  + +R  D +  L  Y   S  PY F LF   + + +FG  +++   I   L+    +
Sbjct: 18  LHASVARNEDKDHPLAQYVTYSAAPYFFNLFPTIMNSALFGLDISHLTDITQALKTFDYI 77

Query: 240 NIRQFTLK 263
            +R  T K
Sbjct: 78  ILRDSTFK 85


>Z81472-3|CAB03888.2|  468|Caenorhabditis elegans Hypothetical
           protein C16D6.2 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 12  ILSYHARTLKLHQQSTLKCTKSRQTD-LEMQL 104
           I+SY A +LK+ Q   LK  K ++TD  EM+L
Sbjct: 208 IISYTAISLKIGQSMILKGAKKQKTDNWEMEL 239


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +1

Query: 169 ISFLGVYLIISKLFWTFWSLYGHSTSDSSPSNTTQAEGQTESWHYQESRRIHSRLVL 339
           ++ L V L  S L   +     ++T   +PSN+T  +G T+     ++ R+++  ++
Sbjct: 352 VAILVVALFTSNLILIYKDSIFNTTEIPTPSNSTNLDGVTDDMDVYDAIRLNAHWIM 408


>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = +3

Query: 42  LHQQSTLKCTKSRQTDLE-MQLYFYFFL------S*KPYCFFLFTESLTNLIFGSLLN 194
           + ++ST+     RQ +L  ++L  Y FL      +  PY FF+F   + N+I G+  N
Sbjct: 58  IRRRSTINLGNQRQRNLRRIRLKVYNFLEKPLNAASAPYHFFIFGLVIANIILGAATN 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,776,826
Number of Sequences: 27780
Number of extensions: 156802
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)