Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20292
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   4.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   4.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 150 FTESLTNLIFGSLLNY----FKIILDILEFVRALNIRQFTLKHNT 272
           FTE L  LIF S +++    F ++    +  RA  I+  +LK  T
Sbjct: 200 FTEHLGYLIFSSTISFYLPLFVMVFTYYKIYRAAVIQTKSLKLGT 244


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 296 QDSVCPSACVVFE 258
           + SVCPS  VVF+
Sbjct: 146 ETSVCPSQIVVFD 158


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 90  DLFVLILCILMLIAGVILMY 31
           D F+++  I+M + G+I+M+
Sbjct: 266 DFFMILNEIIMKLVGIIIMW 285


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 93  QDLFVLILCILMLIAGVILMYGHGM 19
           ++LF+ I+C +  + G+  +   GM
Sbjct: 415 KELFIAIVCFVSYLIGLFCITEGGM 439


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 93  QDLFVLILCILMLIAGVILMYGHGM 19
           ++LF+ I+C +  + G+  +   GM
Sbjct: 468 KELFIAIVCFVSYLIGLFCITEGGM 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,226
Number of Sequences: 438
Number of extensions: 1824
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)