Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20292
(444 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1... 28 2.5
At2g23180.1 68415.m02769 cytochrome P450, putative 28 2.5
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 28 3.3
At3g07330.1 68416.m00874 glycosyl transferase family 2 protein s... 28 3.3
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di... 28 3.3
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 28 3.3
At4g07960.1 68417.m01276 glycosyl transferase family 2 protein s... 27 5.7
At5g53860.2 68418.m06698 expressed protein 26 10.0
At5g53860.1 68418.m06697 expressed protein 26 10.0
>At5g67450.1 68418.m08504 zinc finger (C2H2 type) protein 1 (AZF1)
identical to Cys2/His2-type zinc finger protein 1
[Arabidopsis thaliana] gi|6009887|dbj|BAA85108
Length = 245
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 193 IISKLFWTFWSLYGHSTSDSSPSNTTQAEGQTE 291
+ K F ++ +L GH TS P+NT+ G E
Sbjct: 101 VCGKSFSSYQALGGHKTSHRKPTNTSITSGNQE 133
>At2g23180.1 68415.m02769 cytochrome P450, putative
Length = 516
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 102 LYFYFFLS*KPYCFFLFTESLTNLIFGSLLNYFKIILDILEFVRALNIRQFTLKHNTSGG 281
LY YF +S KP+ FL ++ G L+ ++ + E + A N+ + K GG
Sbjct: 19 LYGYFLISKKPHRSFLTNWPFLGMLPGLLVEIPRVYDFVTELLEASNL-TYPFKGPCFGG 77
Query: 282 AD*ILAL 302
D ++ +
Sbjct: 78 LDMLITV 84
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 94 RCNYIFIFFFLKNLIVFFYS 153
+ N IF+FF L+ LI+ FYS
Sbjct: 456 KANLIFLFFLLRKLILPFYS 475
>At3g07330.1 68416.m00874 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 682
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 94 RCNYIFIFFFLKNLIVFFYS 153
+ N IF+FF L+ LI+ FYS
Sbjct: 478 KANMIFLFFLLRKLILPFYS 497
>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 412
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 79 LDFVHFNVDCWCNFNVRAWYDRMLV 5
LDFVH D W ++ + WY +LV
Sbjct: 161 LDFVHGWNDTWVGYDEQFWYAALLV 185
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 236 CPYKLQNVQNNFEIIK*TPKNE 171
C KLQ + N+ E+IK PK+E
Sbjct: 466 CLMKLQQISNHLELIKPNPKDE 487
>At4g07960.1 68417.m01276 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 699
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 100 NYIFIFFFLKNLIVFFYS 153
N IF+FF L+ LI+ FYS
Sbjct: 500 NLIFLFFLLRKLILPFYS 517
>At5g53860.2 68418.m06698 expressed protein
Length = 422
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 195 YFKIILDILEFVRALNIRQFTLKHNTSGGAD*ILALPRKSQNSQQISFILTATI 356
Y + ++DIL+F L + FTL + +G A +P +S AT+
Sbjct: 27 YGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGFGIPEFISKISYLSVFAVATL 80
>At5g53860.1 68418.m06697 expressed protein
Length = 402
Score = 26.2 bits (55), Expect = 10.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 195 YFKIILDILEFVRALNIRQFTLKHNTSGGAD*ILALPRKSQNSQQISFILTATI 356
Y + ++DIL+F L + FTL + +G A +P +S AT+
Sbjct: 27 YGQQVIDILDFPIKLVLSPFTLAFDIAGSAPRGFGIPEFISKISYLSVFAVATL 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,272
Number of Sequences: 28952
Number of extensions: 133902
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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