Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20291
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    33   0.026
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    30   0.24 
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   1.7  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   4.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   4.0  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    26   4.0  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   5.2  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.9  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   6.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.9  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   6.9  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   9.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -2

Query: 255 PINRLYMPRGVPPVGRPSTKCLPGPGANCVIRCRTNLAAQSATMLASSRIIRRIVRDYFH 76
           P+  +Y P  +     PS   LP   +N V+ C  +  +++  +  +S+ ++  V DYF+
Sbjct: 174 PVIHVYEPDAIVTTTDPS---LPLLDSNAVVECFNSYQSEADPVSNASKALKH-VNDYFN 229

Query: 75  TLAVTISYYG 46
           T      YYG
Sbjct: 230 TSYAPAEYYG 239


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 97  ASYNSRRCQHRCRL-GRQIRPAADHAVRSGSGKTLRAGPAHRWDAP 231
           A Y++ + Q    L G QIR ++  A  SG+G TL  G A R+  P
Sbjct: 187 ADYSTMKLQQLLALSGNQIRSSSSKAKISGTGITLNLGAASRFLMP 232


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 355  YMWNEFFKHIDIEPSNAHVLDGNAXDLVVECRR 453
            + +N+  K+ D+   +AHV+   A DLV   R+
Sbjct: 1015 HRYNDIVKYADLTTQDAHVIKKIAADLVTASRK 1047


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 126 MLASSRIIRRIVRDYFHT-LAVTISYY 49
           ++A  RI RRI +DY H  L+  I Y+
Sbjct: 165 IIAGERIARRIRQDYLHAILSQNIGYF 191


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 19  FNKWNSFVLSVIRYCH-R*RVKVIPNYASYNSRRCQ 123
           +NKW SF+L + + C+    +K+I N    N ++ Q
Sbjct: 706 YNKWFSFLLQLRKVCNDSEALKIIDNCIDKNMQKSQ 741


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 130 CRLGRQIRPAADHAVRSGS 186
           CRLGR++  AA  AVR G+
Sbjct: 132 CRLGREVLDAAAAAVRPGT 150


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 298 FNMDEYVGLPRDHPESY 348
           ++ +  + LPRDHPE Y
Sbjct: 82  YDTERKISLPRDHPEYY 98


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 261 QGREIIFQICDHFQHGRVC 317
           + R+++F +C H  + RVC
Sbjct: 83  KSRKLLFSLCGHMDYVRVC 101


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 152 VLQRITQFAPGPGRHFV 202
           V  RI    PGPG+H++
Sbjct: 109 VANRIFSLVPGPGKHYI 125


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 500 PMNKCTPPASCXSFSKRRHSTT 435
           P N  TPPAS    S+R  ST+
Sbjct: 389 PSNTKTPPASARQSSRRTRSTS 410


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 28   WNSFVLSVIRYCHR*RVKVIPNYASYNSRRCQHRCRLGRQIRPAADHAVRSGSGKTL 198
            +N  + +VI+ C R   KV+  +A+     C H  R+G+ +   A     S SGK +
Sbjct: 940  FNEELGAVIQVCDRDIAKVLELFAANGLSTCVH--RIGKVLSGQAQTISFSRSGKII 994


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 298 FNMDEYVGLPRDHPESYHYY--MWNEFFKHID 387
           F +  +VG+    P S HY+    N++F ++D
Sbjct: 201 FEIRSFVGITGGRPRSAHYFYARQNQYFFYLD 232


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 234  PRGVPPVGRPSTKCLPGP 181
            P G+PPV +PS    P P
Sbjct: 1088 PSGIPPVPKPSVAAPPVP 1105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,387
Number of Sequences: 5004
Number of extensions: 45747
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)