Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20291
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0355 + 3912019-3913046,3914354-3914678 32 0.25
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 31 0.75
05_03_0036 + 7605138-7605445,7605718-7605805,7606355-7606408,760... 29 3.0
03_03_0036 + 13980923-13981504,13982672-13983208 28 4.0
06_03_0176 - 17575155-17575761,17575935-17575972 28 5.3
03_04_0145 + 17683681-17683982,17686058-17686145 28 5.3
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 28 5.3
08_01_0395 - 3502750-3503033,3504844-3505663 27 7.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 27 7.0
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 27 9.2
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 27 9.2
>10_01_0355 + 3912019-3913046,3914354-3914678
Length = 450
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 500 PMNKCTPPASCXSFSKRRHSTTKSXALPSSTCALLGSMSMCLKNSFH 360
P+N P SF + +S A PS+TC+LLG + L S H
Sbjct: 58 PINPTAGPGPSLSFYSLSSAALRSVAAPSATCSLLGHTNSHLLFSDH 104
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 30.7 bits (66), Expect = 0.75
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = -3
Query: 335 WSRGRPTYSSMLKVVTYLKDNFPSLWNLSTVCTCRGASHRWAGPARSVFPDPERTA*SAA 156
WS G ++ ++Y D LWNLS + G + R ++ + E+T+ A
Sbjct: 862 WSLGETVFNLFKPTISYRSDINIELWNLSYSRSFSGFNKRDLEREKAARAELEKTSSRDA 921
Query: 155 GRIWRPSRQRCWHLREL 105
+I P + R LR+L
Sbjct: 922 PKIPLPDQTRNAPLRKL 938
>05_03_0036 +
7605138-7605445,7605718-7605805,7606355-7606408,
7606860-7606910,7607625-7607642
Length = 172
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 285 FER*FPFLVEPINRLYMPRGVPPVGRPSTKCLPGPGANCV-IRCRTNLAAQSATMLASSR 109
+ R FP L+EP+ R G+ P G S + P P ++ + IR R + S + S
Sbjct: 20 YPRRFPLLLEPLRRSTRDAGLAPTGHCSAE--PPPRSHVLPIRARHAGPSLSPPAPSLSN 77
Query: 108 IIRRIVRD 85
+ I+RD
Sbjct: 78 VPPNILRD 85
>03_03_0036 + 13980923-13981504,13982672-13983208
Length = 372
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -3
Query: 278 DNFPSLWNLSTVCTCRGASHRWAGPARSVFPDPERTA*SAAGRIWRPSR 132
D L +L+ RGA P+R P P+R A SAA R+ PSR
Sbjct: 37 DEKARLGDLAATEWLRGAIPLPYDPSRPARPPPDRPARSAAVRLLPPSR 85
>06_03_0176 - 17575155-17575761,17575935-17575972
Length = 214
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +1
Query: 118 CQHRCRLGRQIRPAADHAVRSGSGKTLRAGPAHRWDAPRHVQTVDRFHKEGKLSFKYVTT 297
C+ C + R R R G+ R GPA RW + R T R + SF+ +
Sbjct: 64 CRVECNVARHRRLRLR---RGRGGRGARRGPATRWWSSRRATTSRR---QDYTSFEGPSM 117
Query: 298 FNMDEYVGLPRDHPE 342
+ E+ G R H E
Sbjct: 118 NQLYEFGGSVRHHDE 132
>03_04_0145 + 17683681-17683982,17686058-17686145
Length = 129
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 217 GGQAQHEVSSRTRSELRDPLQDESGGPVGNDAG 119
GG+ V SR RSE+RD + ++ GP DAG
Sbjct: 42 GGEQSGGVWSR-RSEMRDVVGSDAMGPAERDAG 73
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 205 GPAHRWDAPRHVQTVDRFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFF 375
G A RWDAPR DRF K+ ++ ++ + LP E + + + F
Sbjct: 730 GRAPRWDAPRE---NDRFDKQSDFDTEFFSSDRFGDPAWLPSSSHEGPNRHQGEKMF 783
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 208 AQHEVSSRTRSELRDPLQDESGGPVGNDAG 119
A HE ++ R E + P+ SG G DAG
Sbjct: 128 AAHEEATEAREEHQIPIMTSSGPTAGGDAG 157
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 241 VHAEGRPTGGQAQHEVSSRTRSELRDPLQDE---SGGPVGNDAGIFENYKTHSSG 86
+ + R A+ E+SS + S L + ++ +G PVG+ AGI + + T G
Sbjct: 608 IREQSRQAVKPAKKEISSTSVSLLEEGSSEQWSNTGAPVGSSAGISQTWATMKIG 662
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 468 TGGWRSAFVHRRYRPDG 518
TGG+ + HRR+RPDG
Sbjct: 794 TGGFSAVADHRRWRPDG 810
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 503 PPMNKCTPPASCXSFSKRRHSTTKSXAL-PSSTCALLGSMS 384
PP + +P A S+RRHS + S AL PSS+ + S S
Sbjct: 17 PPPLRHSPAALGTPRSRRRHSPSPSLALTPSSSASASASAS 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,687
Number of Sequences: 37544
Number of extensions: 362666
Number of successful extensions: 1045
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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