Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20291
(526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.) 146 1e-35
SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6) 34 0.062
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058) 31 0.44
SB_8728| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.44) 31 0.58
SB_56516| Best HMM Match : PAN (HMM E-Value=0.00055) 29 1.8
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.1
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22) 28 5.4
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 28 5.4
SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016) 27 9.5
SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9) 27 9.5
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 146 bits (354), Expect = 1e-35
Identities = 62/84 (73%), Positives = 72/84 (85%)
Frame = +1
Query: 256 FHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLDGNAXDL 435
F+K G+LSFKYV TFNMDEYVGLP+DHPESYH YMW+ FFKHIDI P NAH+LDGNA DL
Sbjct: 58 FYKRGELSFKYVKTFNMDEYVGLPKDHPESYHSYMWDNFFKHIDILPENAHILDGNAADL 117
Query: 436 VVECRRFEKLIQEAGGVHLFIGGI 507
V EC +FE+ I+ AGGV +F+GGI
Sbjct: 118 VQECNQFEEKIKAAGGVDVFVGGI 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 95 MRLIILEDASIVADWAARFVLQRITQFAPGPGRHFV---XXXXXXXXXXXMYKRLIGSTR 265
MRL+I + V++WAA++V RI Q PGP +FV MY++LI +
Sbjct: 1 MRLVIQNTSVEVSEWAAKYVRNRILQKNPGPDNYFVLGLPTGKCGGTPLGMYRKLIEFYK 60
Query: 266 KG 271
+G
Sbjct: 61 RG 62
>SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6)
Length = 187
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 506 IPPMNKCTPPASCXSFSKRRHSTTKSXALPSSTCAL-LGSMSMC 378
IPP+N CTP + ++ S TK+ LP TC L SMS C
Sbjct: 131 IPPVNPCTPVTTT---CEKTISVTKTQTLPPDTCTLTTTSMSTC 171
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 506 IPPMNKCTPPASCXSFSKRRHSTTKSXALPSSTCAL-LGSMSMC 378
IPP+N CTP + ++ S TK+ LP TC L SMS C
Sbjct: 235 IPPVNPCTPVTTT---CEKTISVTKTQTLPPDTCTLTTTSMSTC 275
>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
Length = 1083
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 169 AVRSGSGKTLRAGPAHRWDAPRHVQTVDRFHKEGKLSFKY 288
A+ S SG+ AG ++ DAPRH + + + K+ +SFK+
Sbjct: 680 ALESISGREKAAGDSNEGDAPRHPKMLSLWKKKLAVSFKH 719
>SB_8728| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.44)
Length = 273
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 169 AVRSGSGKTLRAGPAHRWDAPRHVQTVDRFHKEGKLSFKY 288
A+ S SG+ AG ++ DAPRH + + + K+ +SFK+
Sbjct: 1 ALESISGREKAAGDSNESDAPRHPKMLSLWKKKLAVSFKH 40
>SB_56516| Best HMM Match : PAN (HMM E-Value=0.00055)
Length = 293
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 223 PTGGQAQHEVSSRTRSELRDPLQDESGGPVGNDAGIFENYKTHSSGLLSHVSGDN 59
P G H + S + + + L S G ++AG+ YKT +SGL+ + DN
Sbjct: 6 PVFGVFSHPILSISTLDATNALVFVSLGGSDDNAGVLLEYKTRNSGLIRFNTKDN 60
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 494 NKCTPPASCXSFSK-RRHSTTKSXALPSSTCALLGSM 387
NKC+ S SFS+ ++H +T PS TC L G M
Sbjct: 3099 NKCSN--SYVSFSEMKKHMSTVHNCRPSKTCELCGKM 3133
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 494 NKCTPPASCXSFSK-RRHSTTKSXALPSSTCALLGSM 387
NKC+ S SFS+ ++H +T PS TC L G M
Sbjct: 4230 NKCSN--SYVSFSEMKKHMSTVHNCRPSKTCELCGKM 4264
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 494 NKCTPPASCXSFSK-RRHSTTKSXALPSSTCALLGSM 387
NKC S SFS+ ++H +T PS TC L G M
Sbjct: 3309 NKCRN--SYVSFSEMKKHMSTVHNCRPSKTCELCGKM 3343
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 494 NKCTPPASCXSFSK-RRHSTTKSXALPSSTCALLGSM 387
NKC+ S SFS+ ++H T PS TC L G M
Sbjct: 3939 NKCSN--SYVSFSEMKKHMRTVHNCRPSKTCELCGKM 3973
>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
Length = 581
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -1
Query: 244 FVHAEGRPTGGQAQHEVSSRTRSELRDPLQDESGGPVGNDAGIFENYKTHSSGLLSHVS 68
F H+ GG + + SE + +Q++ G GN + + +SS SH S
Sbjct: 16 FEHSTSHNNGGLSYRSLKRLLPSECKQQVQEQEGCSRGNSSTTIHDQYEYSSDFGSHPS 74
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 241 VHAEGRPTGGQAQHEVSSRTRSELRDPLQ 155
+H GRP G +E + R ELR+PL+
Sbjct: 200 LHRAGRPWDGNTFYENTDVLRKELREPLK 228
>SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)
Length = 313
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 238 VQTVDRFHKEGKL---SFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHID 387
+ T D EGKL K+++ F +D Y+ + + + + W EF + ++
Sbjct: 104 INTRDLKEVEGKLPKDKMKWLSNFVIDSYLKIVKSESTNVEVFGWEEFERGVE 156
>SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)
Length = 485
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 195 CLPGPGANCVIRCRTNLAAQSATMLASSRIIRRI 94
C+PG + + C T ++AT AS+R+ I
Sbjct: 159 CMPGRKVSTCLSCNTTQKIKTATTAASARLCAEI 192
>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 346 YHYYMWNEFFKHIDIEPSNAHVLDGNAXDLVVECRRFEKLIQEAGGV 486
+H + H+ +E N +LD +LV CRR ++L + G+
Sbjct: 269 FHISKYCPNIDHLSLE-HNIKILDDGVKELVSRCRRLKRLQLNSCGI 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,524,708
Number of Sequences: 59808
Number of extensions: 384731
Number of successful extensions: 995
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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