Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20291
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81113-3|CAB03280.1| 267|Caenorhabditis elegans Hypothetical pr... 118 2e-27
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 29 2.7
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 29 2.7
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 29 2.7
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 29 2.7
U40956-4|AAA81759.1| 262|Caenorhabditis elegans Hypothetical pr... 27 6.2
U40956-1|AAA81756.1| 516|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 27 6.2
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 27 8.2
U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z81113-3|CAB03280.1| 267|Caenorhabditis elegans Hypothetical
protein T03F6.3 protein.
Length = 267
Score = 118 bits (285), Expect = 2e-27
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 256 FHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNEFFKHIDIEPSNAHVLDGNAXDL 435
F+ G +SF+ V TFNMDEYV LPRDH ESYH +M++ FF+HIDI P+N H+LDGN D
Sbjct: 54 FYNAGVISFEKVKTFNMDEYVDLPRDHTESYHSFMFDNFFRHIDINPANIHILDGNTSDH 113
Query: 436 VVECRRFEKLIQEAGGVHLFIGGI 507
EC +E+ I+E+GG+ LF+GGI
Sbjct: 114 EKECEEYERKIKESGGIDLFVGGI 137
Score = 36.3 bits (80), Expect = 0.013
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = +2
Query: 95 MRLIILEDASIVADWAARFVLQRITQFAPGPGRHFVXXXXXXXXXXXMYKRLI 253
M+LII E+A VA++AAR+V+ +I + A G++ V MYK+LI
Sbjct: 1 MKLIIEENADKVAEFAARYVVTKINE-ATENGKYLVLGLPTGSTPLGMYKKLI 52
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 234 PRGVPPVGRPSTKCLPGPGANCVIRCRTNLAAQSATMLASSRIIR 100
PRG+PP RP+ LPG N R T + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 234 PRGVPPVGRPSTKCLPGPGANCVIRCRTNLAAQSATMLASSRIIR 100
PRG+PP RP+ LPG N R T + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 234 PRGVPPVGRPSTKCLPGPGANCVIRCRTNLAAQSATMLASSRIIR 100
PRG+PP RP+ LPG N R T + AT L S ++ R
Sbjct: 1307 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1346
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 234 PRGVPPVGRPSTKCLPGPGANCVIRCRTNLAAQSATMLASSRIIR 100
PRG+PP RP+ LPG N R T + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 234 PRGVPPVGRPSTKCLPGPGANCVIRCRTNLAAQSATMLASSRIIR 100
PRG+PP RP+ LPG N R T + AT L S ++ R
Sbjct: 1430 PRGLPPKSRPT--ILPGSHTNSSSRMGT---IKEATFLTSEQVSR 1469
>U40956-4|AAA81759.1| 262|Caenorhabditis elegans Hypothetical
protein ZK402.1 protein.
Length = 262
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 238 VQTVDRFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNE 369
++TVD + K + F + N D L DH + Y M E
Sbjct: 64 IETVDGYPKPEPVDFDFEELLNRDSTYNLLIDHSQEYKEVMMEE 107
>U40956-1|AAA81756.1| 516|Caenorhabditis elegans Hypothetical
protein ZK402.5 protein.
Length = 516
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 238 VQTVDRFHKEGKLSFKYVTTFNMDEYVGLPRDHPESYHYYMWNE 369
++TVD + K + F + N D L DH + Y M E
Sbjct: 260 IETVDGYPKPEPVDFDFEELLNRDSTYNLLIDHSQEYKEVMMEE 303
>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
protein 1, isoform a protein.
Length = 1022
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 151 ESGGPVGN-DAGIFENYKTHSSGLLSHVSGDNILLRTIRTNSTY*KTKD 8
+ GG V N DA I Y T+ G + + L+RT RT+S + KD
Sbjct: 914 DGGGCVSNNDAPILRQYLTNHQGPATRIDSVRELMRT-RTDSRWFVVKD 961
>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
protein F57C7.1b protein.
Length = 1087
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 258 EPINRLYMPRGVPPVGRPS--TKCL 190
EP++ + PR PP G+P+ T CL
Sbjct: 263 EPVDGVVQPRTEPPAGKPTRHTNCL 287
>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
protein F57C7.1a protein.
Length = 1209
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = -2
Query: 258 EPINRLYMPRGVPPVGRPS--TKCL 190
EP++ + PR PP G+P+ T CL
Sbjct: 263 EPVDGVVQPRTEPPAGKPTRHTNCL 287
>U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical
protein D2092.2 protein.
Length = 378
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 RHVQTVDRFHKEGKLSFKYVTTFNMDEYVGL-PRDHPESYHYYMWNEFFKHID 387
RH T+D+F + VTT N + D P S +++ N FF +D
Sbjct: 190 RHYNTIDKFLRAVDKVINVVTTINENGGRSFGDWDLPNSQQFHLENTFFGVVD 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,658
Number of Sequences: 27780
Number of extensions: 279965
Number of successful extensions: 797
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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