Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20291
         (526 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40150.1 68418.m04872 peroxidase, putative identical to perox...    29   1.9  
At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    28   3.3  
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    28   3.3  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    28   4.4  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    28   4.4  
At5g13380.1 68418.m01541 auxin-responsive GH3 family protein sim...    27   5.8  
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    27   5.8  
At5g13360.1 68418.m01539 auxin-responsive GH3 family protein sim...    27   5.8  
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa...    27   7.7  
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put...    27   7.7  

>At5g40150.1 68418.m04872 peroxidase, putative identical to
           peroxidase ATP26a {Arabidopsis thaliana}
           GP|1890317|emb|CAA72487
          Length = 328

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 23/64 (35%), Positives = 30/64 (46%)
 Frame = -2

Query: 192 LPGPGANCVIRCRTNLAAQSATMLASSRIIRRIVRDYFHTLAVTISYYGQYERIPLIEKQ 13
           LPG G + VIR +T L       ++ S II   VRD    L VT+   G Y  I L  + 
Sbjct: 103 LPGDGFDVVIRAKTALELACPNTVSCSDIIAVAVRD----LLVTVG--GPYYEISLGRRD 156

Query: 12  KTTA 1
             T+
Sbjct: 157 SRTS 160


>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 142 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 56
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 142 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 56
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At1g54560.1 68414.m06222 myosin, putative similar to myosin
           GI:433663 from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = +1

Query: 334 HPESYHYYMWNEFFKHIDIEPSNAHVLDGNAXDLVVECRRFEKLIQEAGGVHLFIGGI 507
           HP+++HY   ++ F+ + I  ++ ++    A D+V    + ++ I       L +G +
Sbjct: 278 HPKTFHYLNQSKCFELVGISDAHDYIATRRAMDIVGMSEKEQEAIFRVVAAILHLGNV 335


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
           myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
           thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +1

Query: 334 HPESYHYYMWNEFFKHIDIEPSNAHVLDGNAXDLVVECRRFEKLIQEAGGVHLFIGGI 507
           HP+++HY   ++ F+ + I  ++ ++    A D+V    + ++ I       L IG I
Sbjct: 283 HPKTFHYLNQSKCFELVGISDAHDYLATRRAMDIVGISEKEQEAIFRVVAAILHIGNI 340


>At5g13380.1 68418.m01541 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 624

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 326 GRPTYSSMLKVVTYLKDNFPSL 261
           G P  SS LKV+ +L+D++P L
Sbjct: 246 GAPYASSFLKVIKFLEDHWPEL 267


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 326 GRPTYSSMLKVVTYLKDNFPSL 261
           G P  SS LKV+ +L+D++P L
Sbjct: 216 GAPFASSFLKVIKFLEDHWPEL 237


>At5g13360.1 68418.m01539 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 594

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 326 GRPTYSSMLKVVTYLKDNFPSLW-NLSTVC 240
           G P  SS LK++ +L+D++P    N+ T C
Sbjct: 216 GAPFASSFLKIIKFLEDHWPEFCSNIRTGC 245


>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
           PF03479: Domain of unknown function (DUF296); contains
           Pfam PF02178: AT hook motif;
          Length = 439

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = -1

Query: 241 VHAEGRPTGGQAQHEVSSRTRSELRDPLQDESGGPVGNDAGIFEN 107
           V   G P     QH   S   +E   PL   S     N+ GIF N
Sbjct: 371 VGGPGSPRSQGQQHSSESSEENESNSPLHRRSNNNNSNNHGIFGN 415


>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           [Nicotiana rustica] GI:609175; contains Pfam profile
           PF00112: Papain family cysteine protease
          Length = 362

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 142 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 56
           GPV     ++E++  + SG+  H++G NI
Sbjct: 258 GPVEVAFTVYEDFAHYKSGVYKHITGTNI 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,966,351
Number of Sequences: 28952
Number of extensions: 259290
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)