Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20290
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.1  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 323 YHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLL 472
           +H +  Q    + T   +   N++Y N N       N N   Q   EN+L
Sbjct: 66  HHQTIPQDNPIINTETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHENML 115


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 323 YHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLL 472
           +H +  Q    + T   +   N++Y N N       N N   Q   EN+L
Sbjct: 66  HHQTIPQDNPIINTETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHENML 115


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 323 YHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLL 472
           +H +  Q    + T   +   N++Y N N       N N   Q   EN+L
Sbjct: 66  HHQTIPQDNPIINTETGLSYTNLDYGNSNFPPINHQNYNEPYQRTHENML 115


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 410 IFCETESNDNTEMQLKQENLLSTTIYPNSFQIT 508
           IF ET +N+NT    +Q+N ++ T    S   T
Sbjct: 114 IFLETVANENTTNCPEQKNTVTVTFTVQSDDTT 146


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 278 NFYTKVIENEKKLLCYHTSKDQVRNSVQ 361
           NFY   +  +   LCY T   QV  ++Q
Sbjct: 136 NFYFWFVLKQVMFLCYSTYGIQVFGTMQ 163


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 422 FHKKYFHYSIQY 387
           FH +Y HY  +Y
Sbjct: 440 FHNQYAHYPAEY 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,980
Number of Sequences: 336
Number of extensions: 2533
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)