Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20290
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.20
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 29 0.34
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 26 4.2
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 26 4.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.6
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 9.7
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 9.7
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 9.7
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 30.3 bits (65), Expect = 0.20
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +2
Query: 215 LKQISSE*SLLFVLNKIND--IHNFYTKVIENEKKLLCYHTSKDQVRN-SVQTANEMQDV 385
L Q E LL ++I D F V E+EK YH S + +R S+Q A + +++
Sbjct: 103 LAQNHKEEKLLQTEDEIQDEGYSGFENYVEESEKLQEIYHHSSESLRTRSIQMAVDQKNM 162
Query: 386 NIEYCNENIFCETESNDNTEMQ 451
+E +E+I +S ++T+++
Sbjct: 163 EMELDDEDIAEPIQSWEHTQIK 184
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 266 NDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIE-YCNENIFCETESNDNT 442
+++ NF+TKV+E+ K L D + +++T ++ I+ N N F E D+T
Sbjct: 150 SELQNFFTKVVEDNIKALIKPQYVDHIPRAIKTGDKTVSGLIKARANNNNF--EEVMDHT 207
Query: 443 EMQ 451
++Q
Sbjct: 208 DLQ 210
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 254 LNKINDIHNFYTKVIENEKKLLCYHTSKDQVR---NSVQTANEMQDVNIE 394
+ K + I + Y IENEKK S+ Q + +Q AN+++ +N E
Sbjct: 43 VKKYDQIESEYKTNIENEKKAFIKDVSQVQQKIKEFEIQKANQIKQLNEE 92
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 461 LALTASQYYHCSQFHKKYFHYSIQYLHLAFHLLFELNS 348
LA+ A H K +HY +Q LHL ++ E+ S
Sbjct: 279 LAIDAINGSRLKHSHYKQYHYVVQSLHLWLLIMGEIFS 316
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/93 (19%), Positives = 41/93 (44%)
Frame = +2
Query: 251 VLNKINDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETES 430
++ K N +++ ++ N + L HTS + ++ + IEY NE E+
Sbjct: 161 IIMKSNWLYDALVELDNNMGENLIIHTSSQKSTFLLRCVGALSTTEIEYPNEKSVLESFE 220
Query: 431 NDNTEMQLKQENLLSTTIYPNSFQITRKISIFI 529
D+ + +L+ + + Q+ K+++ I
Sbjct: 221 TDSENTYSYRFSLIRHAL--KALQVGSKVNLRI 251
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 296 IENEKKLLCYHTSKDQVRNS 355
+EN K LC + S D+VRNS
Sbjct: 1200 LENTVKYLCEYDSIDKVRNS 1219
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 278 NFYTKVIENEKKLLCYHTSKDQV 346
N Y K+++NE + YH+ D V
Sbjct: 11 NVYGKLVDNETRCFHYHSKADVV 33
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 24.6 bits (51), Expect = 9.7
Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +2
Query: 176 FNENIKMLLTKDYLKQISSE*SLLFVLNKINDIHNFYTKV-IENEKKLLCYHTSKDQVRN 352
+ + +L + ++Q+ +E ++ K D+ + + V ++ E+++ +H +KDQVRN
Sbjct: 440 YQQQQSLLQLESNIQQLENEKKAAKLIEK--DLLSQISHVKLQFEQQIKAHHYAKDQVRN 497
Query: 353 SVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLLSTTI 484
+EM + E + +++ +KQ N L +
Sbjct: 498 ---LNDEMVALRAELEVVKAMNSQPDDPDSDYAIKQNNALQNRL 538
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 146 YDDYSQET*CFNENIKMLLTKDYLKQISSE*SLLFVLNKINDIH 277
+D ++ET F EN+ + +D L + E ++ +L+ N H
Sbjct: 198 FDIKNEETFKFRENVALETLEDLLHWMIHENGVIGILDATNSTH 241
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +2
Query: 263 INDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQD---VNIEYCNENIFCETESN 433
I D+ ++E E +LL T Q + +EMQ+ V + C E + ETE
Sbjct: 146 ITDLRQQNASLVE-ENQLLS--TQSKQWERRARDEHEMQESLAVRLADCEEQLARETERQ 202
Query: 434 DNTEMQLKQ 460
+ E+++++
Sbjct: 203 EQYEVEIQR 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,019
Number of Sequences: 5004
Number of extensions: 40542
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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