Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20290
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 30 1.4
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964... 28 5.6
12_02_0437 - 19084990-19087695 27 7.5
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 27 7.5
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 27 7.5
05_07_0219 - 28474661-28475146,28475979-28476644 27 9.9
03_02_0492 - 8861472-8861517,8862672-8862781,8862889-8863059,886... 27 9.9
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 87 SINTNMDATCRLCLSDKDENTTIIHKKHDVLMKISKCFSLKITLNKSLPNRA 242
S+ + D T L DK EN +H+ ++L K+ + L LNK + A
Sbjct: 78 SVQSRSD-TVNTSLFDKRENIEKLHRTRNLLRKVQFIYDLPTRLNKCIKTEA 128
>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
43196512-43196589,43196664-43197727,43197813-43198503,
43198743-43199541,43200010-43200158,43200159-43200286,
43200389-43200494,43200835-43200843,43201332-43201821,
43201896-43202554,43203759-43203851,43204044-43204196,
43205092-43205194,43205376-43205467,43206229-43206306,
43206987-43207049,43207339-43207512
Length = 1902
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 195 CFSLKITLNKSLPNRACSSCSTK 263
C+S+ T N SLP AC +C K
Sbjct: 1855 CYSILHTSNHSLPRLACKTCRHK 1877
>12_02_0437 - 19084990-19087695
Length = 901
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +2
Query: 248 FVLNKINDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETE 427
F+L K+N +F K + KKL +++ ++R Q + +Q N+ E +
Sbjct: 93 FLLGKMNGTESFLRKTLHKSKKLKVWYSVASRLR---QVKSRVQ--NLTVMKERYGIKIS 147
Query: 428 SNDNT 442
ND T
Sbjct: 148 DNDGT 152
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 186 ISKCFSLKITLNKSLPNRACSSCSTK*MTFTIFTQKLLKMKRNSFVIIPVRIKLGI 353
+SK + K NK+ + + S S + F ++LL MKRN+F+ I ++LG+
Sbjct: 380 LSKLYE-KSKANKNALSCSIYSLSKWHLLKACFDRELLLMKRNAFLHITKAVQLGL 434
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 314 LLCYHTSKDQVRNSVQTANEMQDVNIEYCNENI--FCETESNDN 439
+LC+H + +S Q ++D ++ ENI F ET SN+N
Sbjct: 443 VLCHHLTVLPETDSEQLVQALKDDELDNGPENIGRFIETSSNEN 486
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 242 LLFVLNKINDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENI 412
++ V +N+IH+ TKV E H+ D+ ++ + T + DV+ E I
Sbjct: 220 VVLVTTIVNEIHSLGTKVEETTVVEKLLHSVPDKFQSLISTIEQWGDVSEMTVTETI 276
>03_02_0492 -
8861472-8861517,8862672-8862781,8862889-8863059,
8863158-8863262,8863342-8863431,8863719-8863813,
8863933-8864101,8864193-8864345,8864562-8864639,
8864883-8864957,8865076-8865098,8865181-8865268,
8865397-8865432
Length = 412
Score = 27.1 bits (57), Expect = 9.9
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 ENIKMLLTKDYLKQISSE*SLLFVLNK-INDI--HNFYTKVIENEKKLLCYHTSKDQVRN 352
EN + L ++ +S E +++ L K +NDI V + E+ + ++
Sbjct: 58 ENGNIALERENQMLLSKERNIVPSLKKAVNDISLEKDAAAVAKAEEDSASLRAQLNTLQQ 117
Query: 353 SVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLL 472
V + N + NE+I + +N + QLKQE+LL
Sbjct: 118 QVMS-NSYTGFPVGVSNEHILAMEKEVENLQAQLKQESLL 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,298
Number of Sequences: 37544
Number of extensions: 188476
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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