Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20290
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.47 
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                29   1.9  
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_45232| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              28   5.8  
SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 382 ILHFICCLN*IPNLILTGMITKEFLFIFNNFCV 284
           I+ + CC    PNL+ T  I ++ LF FNN  V
Sbjct: 105 IVRYSCCPEPYPNLVFTLHIRRKVLFYFNNLIV 137


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -2

Query: 412 NIFITVFNIYILHFICCLN*IPNLILTGMITKEFLFIFNNFCVKIVNVIYFVEHEEQALF 233
           N  IT+ NI ++  I  +N   N+I+  +I    + I NN  + I+N++  +E + Q+L 
Sbjct: 89  NNIITIINIIVIAIIYNINYNSNIIIITII--NIITIINNIIITIINIM-LLELQTQSLS 145

Query: 232 GR 227
            R
Sbjct: 146 DR 147


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/83 (21%), Positives = 37/83 (44%)
 Frame = +2

Query: 266 NDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTE 445
           ND+     KV   E+KL      KD+ +  +QT +     ++      +   T++    +
Sbjct: 278 NDVVALENKVSTLEQKLSTLQLEKDEEQKELQTKHNAALQDLNNLQTALSAATDNRRQVQ 337

Query: 446 MQLKQENLLSTTIYPNSFQITRK 514
            QLK++  L  ++  +  Q++ K
Sbjct: 338 EQLKEKQQLVISLQHDLNQVSSK 360


>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 409 IFITVFNIYILHFICCLN*IPNLILTGMITKEFLFIFNNFCVKIVNVI 266
           I + +FN+ I+ FI  +N I  +I+   +    + IFN   + IVNVI
Sbjct: 208 IIVIIFNVIIIVFII-INVIITIIIIVNVIIITIIIFNVIIIIIVNVI 254


>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 310 LFIFNNFCVKIVNVIYF-VEHEEQALFGRDLFKVIFSEKHFDIF 182
           +F+F NF + I+N +Y  +E +E+    R  F  +  +K  D+F
Sbjct: 344 IFVFMNFLLSIINNVYADIEDDEEFQKNRFDFFDMVKDKVMDVF 387


>SB_45232| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 381

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
 Frame = -2

Query: 409 IFITV--FNIYILHFICCLN*IPNLILTGMITKEFLFIFNNFCVKIVNVIYFVEHEEQAL 236
           +F+T   FN  +  F   L  + + +   ++T  +LF F  FC      +    + EQ +
Sbjct: 130 VFMTFDRFNAVVFPFKAHL--VSSNVRVCLLTLSWLFAFG-FCAPYFYAVKLQPYGEQDM 186

Query: 235 FGRDLFKVIFSEKHFDIFIKTSCFL*IIVVFSSLSDKHSL 116
              D           DI+  T+C L  IV F  LS  +S+
Sbjct: 187 CVLDWGPAHNQSSAMDIYSTTACVLFTIVPFVLLSIMYSI 226


>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +2

Query: 254 LNKINDIHNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFC-ETES 430
           L  I   +N   +V    ++ L +HT+   V  S    NE + V  EY NE  F    E 
Sbjct: 514 LQVIRAANNTSVRVKTMFRRTLSHHTASSNVSGS----NESKRVKAEY-NEGAFSPRIEH 568

Query: 431 NDNTEMQLKQENLLSTTI 484
            D     LK EN+  T +
Sbjct: 569 FDGIAPDLKLENIKDTEL 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,822
Number of Sequences: 59808
Number of extensions: 263052
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)