Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20290
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            24   2.9  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   8.8  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 143 KYDDYSQET*CFNENIKMLLTKDYLKQISSE*SLLFVLNKIND 271
           K  ++   T C+ +N+      ++LKQI+ E   LF  +  +D
Sbjct: 622 KLVNFKVNTTCYEQNVSFEYEGNWLKQINQEDRPLFKFDYKDD 664


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 337 LTGMITKEFLFIFNNFCVKIVNVIYF 260
           +TG I +     F  FC+  VN ++F
Sbjct: 57  VTGTIQRVVSNTFEGFCIAEVNGVFF 82


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,490
Number of Sequences: 2352
Number of extensions: 9542
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)