Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20290
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66563-1|CAA91468.1| 306|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF016450-5|AAB65984.2| 280|Caenorhabditis elegans Serpentine re... 29 2.9
Z81514-1|CAB04188.1| 144|Caenorhabditis elegans Hypothetical pr... 27 6.7
AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine re... 27 6.7
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 27 8.9
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 27 8.9
U64857-14|AAL16313.1| 402|Caenorhabditis elegans Hypothetical p... 27 8.9
U64857-13|AAC25859.2| 436|Caenorhabditis elegans Hypothetical p... 27 8.9
U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical p... 27 8.9
>Z66563-1|CAA91468.1| 306|Caenorhabditis elegans Hypothetical
protein F46C3.2 protein.
Length = 306
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Frame = -2
Query: 394 FNIYILHFICCLN*IPNLILTGMITK--EFLFIFNNFCV--KIVNVIYFVEHEEQALFGR 227
FN+Y++ F+CC N ++TK ++ ++ +FC K IYFV+ + L
Sbjct: 196 FNVYMVGFLCCCE---NNFSMRLVTKDLDYSSLYVHFCELNKFDLRIYFVKGLQFILLWY 252
Query: 226 DLFKVIFSEKH-FDIFIKTSCFL 161
+ +++ +H +I+ C L
Sbjct: 253 TMLLAVYAHEHDLNIYPALVCVL 275
>AF016450-5|AAB65984.2| 280|Caenorhabditis elegans Serpentine
receptor, class t protein68 protein.
Length = 280
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 421 FTKNIFITVFNIYI-LHFICCLN*IPNLILTGMITKEFLFI 302
FT I + F I++ L +C L+ + + L G IT+ F+F+
Sbjct: 121 FTNTIKTSKFPIFVKLSVVCILSWVVYVFLYGCITQNFMFV 161
>Z81514-1|CAB04188.1| 144|Caenorhabditis elegans Hypothetical
protein F26F2.2 protein.
Length = 144
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 275 HNFYTKVIENEKKLLCYHTSKDQVRNSVQTANEMQDVNIE-YCNENIFCETESNDNTEMQ 451
H+F +++E ++D RN++++ N +++VN E Y N + + EM
Sbjct: 21 HDFMKRMMEMNYNARLSDQARDD-RNAIRSENNLKEVNAEDYSKPNTMSDNNTLRMAEML 79
Query: 452 LKQEN 466
KQ +
Sbjct: 80 DKQNS 84
>AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine
receptor, class z protein67 protein.
Length = 322
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -2
Query: 310 LFIFNNFCVKIVNVIYFVEHEEQALFGRDLFKVIFSEKHFDIFIKTSCFL*IIVVFSSLS 131
LFI + C+ + V +F + L F IF H +F+ ++ I++ LS
Sbjct: 153 LFIKDIICIVLHAVTFFDDSHPYYLIWSVFFITIFYTMHILLFLSALLYIPILISIRKLS 212
Query: 130 DKHSLQV 110
S Q+
Sbjct: 213 HLASSQL 219
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 305 EKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLK 457
+K + CYH+S ++ + + N+E N +F E S+ T +K
Sbjct: 203 DKGVTCYHSSNVTKADAEKIDRFFKQRNVESWNSRLFKEVGSDGKTTYTIK 253
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical
protein F02E9.9a protein.
Length = 707
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 305 EKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLK 457
+K + CYH+S ++ + + N+E N +F E S+ T +K
Sbjct: 165 DKGVTCYHSSNVTKADAEKIDRFFKQRNVESWNSRLFKEVGSDGKTTYTIK 215
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 305 EKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLK 457
+K + CYH+S ++ + + N+E N +F E S+ T +K
Sbjct: 203 DKGVTCYHSSNVTKADAEKIDRFFKQRNVESWNSRLFKEVGSDGKTTYTIK 253
>U64857-14|AAL16313.1| 402|Caenorhabditis elegans Hypothetical
protein C37C3.2b protein.
Length = 402
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +2
Query: 350 NSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLLS 475
N AN++QD+ + + + C++ N T++ +++ N+ S
Sbjct: 77 NGEHDANKLQDILDGFIKKFVLCKSCENPETQLFVRKNNIKS 118
>U64857-13|AAC25859.2| 436|Caenorhabditis elegans Hypothetical
protein C37C3.2a protein.
Length = 436
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +2
Query: 350 NSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLLS 475
N AN++QD+ + + + C++ N T++ +++ N+ S
Sbjct: 77 NGEHDANKLQDILDGFIKKFVLCKSCENPETQLFVRKNNIKS 118
>U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical
protein C37C3.2c protein.
Length = 413
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +2
Query: 350 NSVQTANEMQDVNIEYCNENIFCETESNDNTEMQLKQENLLS 475
N AN++QD+ + + + C++ N T++ +++ N+ S
Sbjct: 77 NGEHDANKLQDILDGFIKKFVLCKSCENPETQLFVRKNNIKS 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,183,397
Number of Sequences: 27780
Number of extensions: 219854
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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