Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20290
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    28   4.7  
At2g27780.1 68415.m03368 expressed protein                             27   8.3  
At1g27360.2 68414.m03333 squamosa promoter-binding protein-like ...    27   8.3  
At1g27360.1 68414.m03332 squamosa promoter-binding protein-like ...    27   8.3  

>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
            similarity to SPL1-Related2 protein [Arabidopsis
            thaliana] GI:6006427; contains Pfam profile PF03110: SBP
            domain
          Length = 1035

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 93   NTNMDATCRLCLSDKDENTTIIHKKHDVLMKISKCFSLKITLNKSLPNRACSSCST 260
            N N ++     L+DK      ++ +H+V+ +      L + +NKS  + +C+SC+T
Sbjct: 922  NHNYNSLVARKLADKRNKQVSLNIEHEVVDQTGLSKRLSLEMNKS--SSSCASCAT 975


>At2g27780.1 68415.m03368 expressed protein
          Length = 368

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 299 ENEKKLLCYHTSKDQVRNSVQTANEMQDVNIEYCNENIF-CETESN-DNTEMQLKQENLL 472
           + +++ L   T K + RNS     + +D   E C+E  F  ET++N     M+ ++ +L+
Sbjct: 172 KEDQRSLTRETEKIKARNSFLALKQKEDHKSETCDEKYFKKETKTNLKPLNMKTRRVSLV 231

Query: 473 STT 481
             T
Sbjct: 232 DVT 234


>At1g27360.2 68414.m03333 squamosa promoter-binding protein-like 11
           (SPL11) identical to squamosa promoter binding
           protein-like 11 [Arabidopsis thaliana] GI:5931665;
           contains Pfam profile PF03110: SBP domain
          Length = 393

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 159 HKKHDVLMKISKCFSLKITLNKSLPNRACSSCS 257
           H+KH V  K SKC  + ++    L  R C  CS
Sbjct: 191 HRKHKVCEKHSKCPKVSVS---GLERRFCQQCS 220


>At1g27360.1 68414.m03332 squamosa promoter-binding protein-like 11
           (SPL11) identical to squamosa promoter binding
           protein-like 11 [Arabidopsis thaliana] GI:5931665;
           contains Pfam profile PF03110: SBP domain
          Length = 393

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 159 HKKHDVLMKISKCFSLKITLNKSLPNRACSSCS 257
           H+KH V  K SKC  + ++    L  R C  CS
Sbjct: 191 HRKHKVCEKHSKCPKVSVS---GLERRFCQQCS 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,285
Number of Sequences: 28952
Number of extensions: 181154
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)