Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20288
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 110 7e-26
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 103 6e-24
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 1.1
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 26 1.5
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 25 2.6
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 25 2.6
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 25 3.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 25 3.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 3.4
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 6.0
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 24 6.0
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 24 6.0
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 24 7.9
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 110 bits (264), Expect = 7e-26
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +2
Query: 8 TPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIV 187
TP PSDI IARSQ PK+IG+LA+EIG+ SE+ YG KAK++L +L RL ++R G Y+V
Sbjct: 308 TPVPSDIEIARSQTPKNIGDLASEIGIAKSELEFYGSHKAKVNLEILQRLAHRRDGHYVV 367
Query: 188 VAGITPTPLGEGKSTTLIGLVQ 253
V GITPTP GEGKST GLVQ
Sbjct: 368 VTGITPTPFGEGKSTLTAGLVQ 389
Score = 51.6 bits (118), Expect = 3e-08
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = +1
Query: 208 TTWGRQKHHSNRAGARLTAHRGKNAFACMRQPSQGPTFGVKGGAAGG 348
T +G K + ++ K A AC+RQPSQGPTFG+KGGAAGG
Sbjct: 374 TPFGEGKSTLTAGLVQALSNLDKLAIACVRQPSQGPTFGIKGGAAGG 420
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 103 bits (248), Expect = 6e-24
Identities = 51/108 (47%), Positives = 72/108 (66%)
Frame = +2
Query: 11 PPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIVV 190
P PSDI IA SQ+PK I LA E+G+ +E+ YG KAK++L+V +RL++++ G Y+VV
Sbjct: 337 PVPSDIEIANSQEPKLISNLAKEMGIYDTELENYGNYKAKVNLAVYERLKHRKDGNYVVV 396
Query: 191 AGITPTPLGEGKSTTLIGLVQG*QHIAGRTHLHACGNRVRGRPLALKG 334
+GITPTP GEGKST + GLVQ H+ G+ + +G +KG
Sbjct: 397 SGITPTPFGEGKSTVVAGLVQAMGHL-GKLGIACVRQPSQGPTFGVKG 443
Score = 54.4 bits (125), Expect = 5e-09
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +1
Query: 265 HRGKNAFACMRQPSQGPTFGVKGGAAGG 348
H GK AC+RQPSQGPTFGVKGGAAGG
Sbjct: 421 HLGKLGIACVRQPSQGPTFGVKGGAAGG 448
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 1.1
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -3
Query: 264 CCQPCTSPIRVVLLPSPSGVGVIPATTMYFPVRWLRNLSRTDSEILALVRPY*DTSLGHR 85
C T P ++ +LP+ ++ T YF R+L L + + ++ LVR D + R
Sbjct: 628 CALSRTIP-KLSILPTNGQYFLLTGATGYFGRRFLEYLVKLNISVVCLVRESSDEAAKER 686
Query: 84 PISAASS 64
IS S
Sbjct: 687 LISLVPS 693
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 1.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 196 YNSDTTWGRQKHHSNRAGARLTAHR 270
Y SD TWG K+ +RAG + +++
Sbjct: 161 YVSDPTWGNHKNVFSRAGLTVKSYK 185
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 261 CQPCTSPIRVVLLPSPSGVGVIPATTMYFPV 169
CQ + PI V L P G V+P+T + V
Sbjct: 119 CQRMSRPINRVGLYIPGGTAVLPSTALMLGV 149
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 2.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 239 LEWCFCLPQVVSELYQQLRCI 177
+ W FCLP++VS ++Q+L+ I
Sbjct: 131 ITWSFCLPRMVS-VFQKLKHI 150
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 176 KYIVVAGI-TPTPLGEGKSTTLIGLVQG 256
K +V+ G+ TPLG G T L+QG
Sbjct: 2 KRVVITGLGAVTPLGNGVKTNWRNLIQG 29
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 3.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 102 CLNMDVLRPRFHCPFSTDY 158
CL ++ PRFHC DY
Sbjct: 215 CLAHPIVGPRFHCLVCEDY 233
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 3.4
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 169 HREIHRSCWYNSDTTWGRQKHHSNRAGARLTAHRGKNAFACMRQPSQGPTFGVKGGAA 342
H H++ SD+ G + SNR + + + G+N+F+ R S T +A
Sbjct: 482 HHHHHKTDLIESDS--GIEASESNRRKSDIFSFSGRNSFSVSRPSSSHSTLSYANDSA 537
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.2 bits (50), Expect = 6.0
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 47 KPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGK 178
KP+ + E +G CP +Y R + + ++ N TG+
Sbjct: 94 KPRQLDEAVTFVGTCPDMCPEYEREQREYQNNLERWEINPETGR 137
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 257 NLAPALLEWCFCLPQVVSELYQQLRCISLC 168
N+ P+ + FC+ ++ LY +L+ I LC
Sbjct: 172 NINPSKKDAIFCIANLLCLLYFRLKQIRLC 201
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 248 VQG*QHIAGRTHLHACGNRVR 310
+ G QH+ G L AC NR++
Sbjct: 705 LDGIQHLDGLLKLSACNNRIK 725
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 23 DIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQ 166
++++ S +PK A E S+ Q + ++ +SVL++ ++Q
Sbjct: 891 EMLVVLSSQPKSTFRRAVENWKYKSDYLQLNLVRLRVYISVLEKYKSQ 938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,567,581
Number of Sequences: 5004
Number of extensions: 31816
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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