Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20288
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008... 100 4e-22
09_02_0028 + 3109502-3110232,3110274-3110727 28 1.8
08_02_1449 - 27174451-27178005 28 2.4
07_01_0799 - 6273520-6274008,6274137-6274151 27 3.1
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 27 3.1
02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623 27 3.1
01_06_1185 + 35218115-35218286,35218628-35218668,35219123-35219326 27 4.1
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 27 5.5
04_01_0309 - 4190933-4191169 27 5.5
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 27 5.5
01_01_0836 + 6527902-6528218,6529280-6529632,6529722-6529889,653... 27 5.5
12_01_0421 - 3321590-3323692 26 7.2
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994... 26 7.2
10_05_0017 + 8037822-8038211 26 7.2
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 26 7.2
06_02_0225 + 13257655-13260693 26 7.2
04_04_0297 - 24219497-24219853,24221242-24222414 26 7.2
11_06_0652 - 25906001-25906237,25906345-25906830 26 9.6
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 26 9.6
05_03_0456 - 14259233-14259235,14259866-14260384 26 9.6
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 26 9.6
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 26 9.6
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 26 9.6
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 26 9.6
01_05_0473 - 22549178-22549532,22549612-22550576 26 9.6
>09_04_0315 +
16600387-16600557,16600652-16600801,16600874-16600897,
16601519-16602694,16603120-16603266,16603477-16603752
Length = 647
Score = 100 bits (239), Expect = 4e-22
Identities = 47/82 (57%), Positives = 59/82 (71%)
Frame = +2
Query: 8 TPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIV 187
+P P+DI IA + P I ++AAE+GL P YG+ KAK+ LSVLD L+ Q+ G Y+V
Sbjct: 17 SPVPADIDIANAVSPLPIADIAAELGLRPEHFDLYGKYKAKVLLSVLDELKGQQDGYYVV 76
Query: 188 VAGITPTPLGEGKSTTLIGLVQ 253
V GITPTPLGEGKSTT +GL Q
Sbjct: 77 VGGITPTPLGEGKSTTTVGLCQ 98
Score = 48.4 bits (110), Expect = 2e-06
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +1
Query: 271 GKNAFACMRQPSQGPTFGVKGGAAGG 348
G C+RQPSQGPTFG+KGGAAGG
Sbjct: 113 GVEVVTCLRQPSQGPTFGIKGGAAGG 138
>09_02_0028 + 3109502-3110232,3110274-3110727
Length = 394
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 348 PSSSTPFNAKGRPLTRLPHACKCVLPAMCCQ 256
P+ S+PF+A L RLP+ V A+ C+
Sbjct: 15 PTISSPFDAVSEDLLRLPNMASLVNAALACK 45
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 115 SILRHLARTQTDLCCQLSDVFRLLRTSYHDVTGRWR 8
S++R + T C L D LLR+ H+V GR R
Sbjct: 236 SLVRSIIELATRGNCTLPDRIELLRSRLHEVVGRKR 271
>07_01_0799 - 6273520-6274008,6274137-6274151
Length = 167
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 284 LHACGNRVRGRPLALKGV 337
LHACGN GRP L GV
Sbjct: 31 LHACGNDNNGRPPLLGGV 48
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +3
Query: 54 KTSESWQQRSVCVRAR---CLNMDVLR 125
KT W+ R+VC+ +R C+N DVL+
Sbjct: 156 KTEFGWRLRTVCLGSRKNLCINKDVLK 182
>02_04_0264 - 21393029-21393046,21394249-21394814,21395005-21395623
Length = 400
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 318 GRPLTRLPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPATTMYFPV 169
G R C +L C PC P VV+LP P G + ++ P+
Sbjct: 348 GAVALRYSFCCSRILCGTCGCPCDPP-AVVVLPPPEFFGSVYLLVIHQPI 396
>01_06_1185 + 35218115-35218286,35218628-35218668,35219123-35219326
Length = 138
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -3
Query: 285 KCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPATTMYFPVRW 163
+C C PC P+ V + P +P TT Y+P W
Sbjct: 94 RCTAKCGACVPCY-PVHVAVPPG------VPVTTEYYPEAW 127
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -1
Query: 257 NLAPAL--LEWCFCLPQVVSELY 195
NL P L LEWC C P + ++Y
Sbjct: 637 NLHPRLVCLEWCTCAPSSILQVY 659
>04_01_0309 - 4190933-4191169
Length = 78
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 135 EILALVRPY*DTSLGHRPISAASSPMSLGF*ERAITM 25
EI+ + PY LGHR + P +G E +TM
Sbjct: 14 EIMGMGMPYAWADLGHRLLGPWPEPQGVGIVELKLTM 50
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 172 REIHRSCWYNSDTTWGRQKHHSNRAGARLTAHRGKNAFACMRQPSQ 309
R I+ C Y T++G + S R ++T H GK + +PSQ
Sbjct: 518 RYINLFCKYEEATSFGSKLEVSMRLSNKVTCHCGK-CVVVVAEPSQ 562
>01_01_0836 +
6527902-6528218,6529280-6529632,6529722-6529889,
6530004-6530051,6530142-6530372,6530435-6530548,
6530638-6530723
Length = 438
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 273 PAMCCQPCTSPIRVVLLPSPS 211
P++CC PC +P+R LP S
Sbjct: 76 PSVCC-PCEAPLRACRLPRAS 95
>12_01_0421 - 3321590-3323692
Length = 700
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +1
Query: 142 RSRQITQPTHREIHRSCWYNSDTTWGRQKHHSNRAGARLTAHRGKNAFACMRQPSQGPTF 321
+S +QP+ R+ + + + G HH + G RL H A +++ +
Sbjct: 19 KSSSFSQPSARDDKPRDAIDRNLSLGSAGHHHHHDGRRLDLHHPPPAGDAIKEEYEEEER 78
Query: 322 GVKGGAAGG 348
G G GG
Sbjct: 79 GGAGAPCGG 87
>11_06_0210 +
21296782-21296909,21297135-21298844,21299127-21299418,
21300210-21300519,21300890-21301110
Length = 886
Score = 26.2 bits (55), Expect = 7.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 65 ELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKY 181
+LAAE C + G T+A L+ + LRN RTG Y
Sbjct: 726 DLAAE---CYINALKIGHTRAHQGLARVHFLRNSRTGAY 761
>10_05_0017 + 8037822-8038211
Length = 129
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 220 RQKHHSNRAGARLTAHRGK 276
R +HH N+ G +HRGK
Sbjct: 94 RSRHHLNKEGLEKISHRGK 112
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 312 PLTRLPHACKCVLPAMC 262
PLT +P CVLPA+C
Sbjct: 867 PLTSIPLLIYCVLPAIC 883
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 26.2 bits (55), Expect = 7.2
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 187 SCWYNSDTTWGRQ 225
SCWY +T WG++
Sbjct: 694 SCWYEDNTEWGQR 706
>04_04_0297 - 24219497-24219853,24221242-24222414
Length = 509
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 131 ISLSVLDRLRNQRTGKYIVVAGITPTPLGEG 223
++ SV + G Y+V AG+TP P+ G
Sbjct: 36 VARSVEQGNKRSGNGDYVVPAGLTPNPMMNG 66
>11_06_0652 - 25906001-25906237,25906345-25906830
Length = 240
Score = 25.8 bits (54), Expect = 9.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 217 GRQKHHSNRAGARLTAHRGKNAFACMRQPSQGPTFGVKGGAAGG 348
G Q+ + + G R RGK A A P Q P F + GA GG
Sbjct: 184 GGQQQNGGKGGKR---RRGKKA-AGPPPPPQQPQFRPRAGAGGG 223
>06_02_0008 -
10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 124 LSTSILRHLARTQTDLCCQLSDVFRLL 44
LST + RH RTQ C ++++F L+
Sbjct: 352 LSTELSRHGIRTQALFVCVIAELFGLI 378
>05_03_0456 - 14259233-14259235,14259866-14260384
Length = 173
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 214 WGRQKHHSNRAG-ARLTAHRGKNAFACMRQPSQGPTFGVKGGAAGG 348
W ++++ AG AR + F QP+ V+GGAAGG
Sbjct: 87 WHKRRNRWREAGLAREARSVDEAGFVREAQPAVEEATSVRGGAAGG 132
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 312 PLTRLPHACKCVLPAMC 262
P+T +P CVLPA+C
Sbjct: 855 PITSIPLIAYCVLPAIC 871
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 312 PLTRLPHACKCVLPAMC 262
PLT +P C+LPA+C
Sbjct: 853 PLTSIPLLLYCILPAIC 869
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 104 SQYGRTKAKISLSVLDRLRNQRTGKYIVVAGITPTPLGEGKSTTLIGLVQG 256
S G K S + + L ++ + I PTP+ TT++G+++G
Sbjct: 761 SDVGNAKDMNSPASYNSLGRTAAPTEMIDSDIKPTPVSNSLGTTIMGVIRG 811
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 127 QDFTVRSRQITQPTHREIH-RSCWYNSDTTWGRQKHHSNRAGA 252
Q +VR + PTH + + S T GR++H S R G+
Sbjct: 434 QPVSVRRKSAKPPTHGDRYDDEAKMTSQTPGGRRRHSSRRNGS 476
>01_05_0473 - 22549178-22549532,22549612-22550576
Length = 439
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 294 HACKCVLPAMCCQPCTSPIRVVLLPSPSGVG 202
H K ++ QPC SP+RV+ + P VG
Sbjct: 150 HEEKELIREFLLQPCDSPLRVLPIIRPREVG 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,820
Number of Sequences: 37544
Number of extensions: 255791
Number of successful extensions: 830
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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