Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20288
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)                       44   3e-05
SB_33009| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)                   29   1.1  
SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)                  29   1.1  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           28   1.9  
SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_12319| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_4145| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.3  
SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.3  
SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_26196| Best HMM Match : BACK (HMM E-Value=2.2)                      27   5.7  
SB_22145| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_8433| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     26   7.5  
SB_29199| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_27053| Best HMM Match : DUF346 (HMM E-Value=3.7)                    26   9.9  
SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)               26   9.9  
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  
SB_57694| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
          Length = 388

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +1

Query: 262 AHRGKNAFACMRQPSQGPTFGVK 330
           AH  KN F C+RQPSQGPTFG+K
Sbjct: 24  AHLKKNCFTCIRQPSQGPTFGIK 46



 Score = 35.1 bits (77), Expect = 0.016
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 197 ITPTPLGEGKSTTLIGLVQ 253
           ITPTP GEGKSTT IG+ Q
Sbjct: 2   ITPTPFGEGKSTTTIGVSQ 20


>SB_33009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 224 CLPQVVSELYQQLRCISLCVGCVICRERTVKS 129
           C+P +    +  +R  S+C  C IC E  +K+
Sbjct: 168 CVPCIAGTNFSNVRDYSMCQACTICGENRLKT 199


>SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)
          Length = 485

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 348 PSSSTPFNAKGRPLTRLPHACKCVLPAMCCQPCTSPIRVVLLP 220
           P    P   KG+P  R+P  C   +P     P  +  R+ L+P
Sbjct: 380 PPPPPPRPRKGKPHPRIPSVCATTMPTRKTPPTPALSRMALVP 422


>SB_26942| Best HMM Match : TNFR_c6 (HMM E-Value=0.26)
          Length = 327

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 224 CLPQVVSELYQQLRCISLCVGCVICRERTVKS 129
           C+P +    +  +R  S+C  C IC E  +K+
Sbjct: 68  CVPCIAGTNFSNVRDYSMCQACTICGENRLKT 99


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 266 CAVNLAPALLEWCFCLPQVVSELYQQLRCISLCVGCV 156
           C   L   L ++  CL Q++  L Q ++C++  + C+
Sbjct: 159 CLTQLIVCLTQFVVCLTQLIVYLAQLIKCVAQLIKCL 195


>SB_31572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 349 PLQQHPL*RQRSAPDSVAACMQMRSSRDVLSTL 251
           PL+  P+ +QR+ P+   AC   RS + V S L
Sbjct: 3   PLEIIPVVKQRALPERHEACAPYRSEKSVCSPL 35


>SB_12319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 270 AMCCQPCTSPIRVVLLPSPSGVGVIP 193
           A CC    +P RV L P PSG  + P
Sbjct: 30  AFCCHGYLAPGRVCLYPGPSGRHLSP 55


>SB_4145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 303 RLPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPATTMYFPVRWLRNLSR 145
           RLP      LP + C P  SP+  ++L       + P       + W+R L+R
Sbjct: 16  RLPTCTPVTLPFISCTPLHSPLNAIVLT------LTPLKKSLVYLTWIRTLAR 62


>SB_1619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
 Frame = +1

Query: 76  RDRSVSERGVSIWTY*GQDFT----VRSRQITQPTHREIHRSCWYNS 204
           RD   S  GVS W Y G   T    V S       +   HRS W+NS
Sbjct: 483 RDFIASWNGVSFWLYPGMAATPTAVVTSDAAGAMGYGAFHRSRWFNS 529


>SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -3

Query: 318 GRPLTRLPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPATTMYFPVRWLRNLSRTD 139
           G  + RLP      +P + C P  SP      P+ + + + P       + W+R L+R  
Sbjct: 114 GVRIQRLPTCTPVTMPFISCTPVHSP------PNATVLTLTPLKKSLVDLTWIRTLAR-- 165

Query: 138 SEILALVRPY 109
             +L   RPY
Sbjct: 166 --LLEKRRPY 173


>SB_26196| Best HMM Match : BACK (HMM E-Value=2.2)
          Length = 97

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 277 SSRDVLSTLHQPY*SGAFAFPKWCRSY-TSNYDVF 176
           S+ DV++ L+      A    +WCR +  SNY VF
Sbjct: 13  STSDVINLLNMAQVYNADQLAQWCRHFIASNYSVF 47


>SB_22145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 35  ARSQKPKDIGELAAEIGLCPS-EVSQYGRTKAKISLSVLDRLRNQRTGK 178
           A+++  K +G+   EI +  S ++ Q    +AK+ LS+  R RNQ   K
Sbjct: 423 AQAEFTKLLGDAIIEIDIAQSVQMYQLAVQEAKVGLSLARRKRNQHRDK 471


>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 169 HREIHRSCWYNSDTTWGRQKHH 234
           HR IH++ W + D + G Q  H
Sbjct: 105 HRRIHKATWVSPDLSTGNQIDH 126


>SB_8433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 303 RLPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPATTMYFPVRWLRNLSR 145
           RLP      LP + C P   P   ++L     + ++  + +Y  + W+RNL+R
Sbjct: 16  RLPTCTPVTLPFISCTPVHPPTNAIVLT----LTLLKKSLVY--LTWIRNLAR 62


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 131 ISLSVLDRLRNQRTGKYIVVAGITPTPLGEGKSTTLIGLV 250
           + L++L+ L N    K + + GI  T + +GK  T++GLV
Sbjct: 60  VLLTLLEVLLNT---KLVKMVGINNTDIADGKVMTILGLV 96


>SB_29199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 318 GRPLTRLPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPATTMYFPVRWLRNLSR 145
           G  + RLP      +P + C P  SP      P+ + + + P       + W+R L+R
Sbjct: 78  GVRIQRLPTCTPVTMPFISCTPVHSP------PNATVLTLTPLKKSLVDLTWIRTLAR 129


>SB_27053| Best HMM Match : DUF346 (HMM E-Value=3.7)
          Length = 161

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 244 AGARLTAHRGKNAFACMRQPSQGPTFGVKGG 336
           AGA  T  +G +AFA   QP Q  T+ +  G
Sbjct: 47  AGAVCTRAQGHSAFARSSQPKQDSTYHMADG 77


>SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)
          Length = 137

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 267 SREERICMHAATESGA--DLWR*RGCCW 344
           S +ER+      E+GA  +L + RGCCW
Sbjct: 27  SMDERLRFDCFPEAGATEELCQARGCCW 54


>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 297 PHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPA 190
           PH   C +   C        RV L+P+P G G++ A
Sbjct: 125 PHTVPCKVTGKC-----GSTRVRLIPAPRGTGIVSA 155


>SB_57694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = +2

Query: 41  SQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDR-LRNQRTGKYIVVAG-ITPTPL 214
           ++K +D+  L AE     SE  +    K  +  ++++R  R +R   Y  +A  I    +
Sbjct: 143 NEKERDVMSLPAEEDTAVSEAEKIQVGKPVVPAALMNRPTRGERRFAYWALAECILAYYV 202

Query: 215 G--EGKSTTLIGLVQG*QHIAGRTHLHACGNRV 307
           G  EG S  L        H+AG   LH C +R+
Sbjct: 203 GTDEGVSEVL--------HVAGEKRLHRCVSRI 227


>SB_51675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 272 PRCAVNLAPALLEWCFCLPQVVSEL 198
           PRC V+  P L ++C C  ++  E+
Sbjct: 663 PRCVVDRHPELRKYCVCYEKLNKEI 687


>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = -2

Query: 310 PDSVAACMQMRSSRDVLSTLHQPY*SGAFAFPKWCRSYTSNYDVF------PCALV 161
           P+S+    Q + +R  LSTLH  Y  G ++  K   ++   Y  F      PCAL+
Sbjct: 176 PESLKMLPQYKLARVHLSTLHNEYVVGNWSGIKALFTFERMYSYFVIHVYGPCALI 231


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,703,040
Number of Sequences: 59808
Number of extensions: 268884
Number of successful extensions: 1503
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)