Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20288
         (350 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   4.4  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    22   5.8  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    22   7.6  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 226 KHHSNRAGARLTAHRGKNAFACMRQPSQGPTFGVKG--GAAGG 348
           K   + A  + T  +GK   A MRQ ++G   G+ G  G  GG
Sbjct: 570 KLQESMAAMQSTRSQGKVLDALMRQKNEGRIPGILGRLGNLGG 612


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 LSVLDRLRNQRTGKYIVVAGI 199
           L +LD+L      KYI VAG+
Sbjct: 13  LQILDQLLLPAESKYIPVAGV 33


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 20/84 (23%), Positives = 32/84 (38%)
 Frame = -2

Query: 322 QRSAPDSVAACMQMRSSRDVLSTLHQPY*SGAFAFPKWCRSYTSNYDVFPCALVA*SVEN 143
           QR++P   A   Q    R+ ++        GA + P W R  T +Y    C L       
Sbjct: 101 QRTSPYDSAMDFQFGEGRECVNC-------GAISTPLWRRDGTGHYLCNACGLYHKMNGM 153

Query: 142 GQ*NLGLSTSILRHLARTQTDLCC 71
            +  +  S  ++   A  +  LCC
Sbjct: 154 NRPLIKPSKRLVSQTATRRLGLCC 177


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,924
Number of Sequences: 2352
Number of extensions: 8381
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)