Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20288
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical pr...   118   2e-27
U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical pr...   118   2e-27
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    31   0.18 
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    28   2.2  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    27   3.8  
AF045643-6|AAC02593.2|  570|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z92777-5|CAB07171.1|  409|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81500-3|CAB04095.1|  228|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z81055-5|CAB02894.1|  278|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z80216-9|CAH10778.1|  403|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z48621-6|CAA88544.1|  238|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      26   8.7  

>U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4a protein.
          Length = 640

 Score =  118 bits (283), Expect = 2e-27
 Identities = 55/83 (66%), Positives = 66/83 (79%)
 Frame = +2

Query: 5   ITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYI 184
           +TP PSDI I+R+Q PKDI ++A EIG+   E+  YGR KAK+SL +LDRL   + GKY+
Sbjct: 14  LTPVPSDIAISRAQPPKDIEKVAGEIGIKQEELDLYGRKKAKVSLDILDRLSEVKNGKYV 73

Query: 185 VVAGITPTPLGEGKSTTLIGLVQ 253
           VVAGITPTPLGEGKSTT IGLVQ
Sbjct: 74  VVAGITPTPLGEGKSTTTIGLVQ 96



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +1

Query: 256 LTAHRGKNAFACMRQPSQGPTFGVKGGAAGG 348
           L AH  K  FAC+RQPSQGPTFG+KGGAAGG
Sbjct: 98  LGAHLHKKVFACVRQPSQGPTFGIKGGAAGG 128


>U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4b protein.
          Length = 640

 Score =  118 bits (283), Expect = 2e-27
 Identities = 55/83 (66%), Positives = 66/83 (79%)
 Frame = +2

Query: 5   ITPPPSDIVIARSQKPKDIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYI 184
           +TP PSDI I+R+Q PKDI ++A EIG+   E+  YGR KAK+SL +LDRL   + GKY+
Sbjct: 14  LTPVPSDIAISRAQPPKDIEKVAGEIGIKQEELDLYGRKKAKVSLDILDRLSEVKNGKYV 73

Query: 185 VVAGITPTPLGEGKSTTLIGLVQ 253
           VVAGITPTPLGEGKSTT IGLVQ
Sbjct: 74  VVAGITPTPLGEGKSTTTIGLVQ 96



 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +1

Query: 256 LTAHRGKNAFACMRQPSQGPTFGVKGGAAGG 348
           L AH  K  FAC+RQPSQGPTFG+KGGAAGG
Sbjct: 98  LGAHLHKKVFACVRQPSQGPTFGIKGGAAGG 128


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -3

Query: 348 PSSSTPFNAKGRPLTRLPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGV 199
           PS S+ F   GRPL     + KC      C P T+P   +   S SG+GV
Sbjct: 834 PSGSSVFEYGGRPLACPAGSNKCP-QGYSCMPSTNPQHHLCCSSGSGMGV 882


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +1

Query: 235 SNRAGARLTAHRGKNAFACMRQPSQGPTFGVKGGAAGG 348
           S   G RL   RG+ A A    PSQ    G  GG  GG
Sbjct: 187 SAELGDRLYGRRGRRADAAGHYPSQRGGSGGGGGGGGG 224


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 130 DFTVRSRQITQPTHREIHRSCWYNSDTTWGRQK 228
           DF   S Q  Q       RSC Y +  TW R K
Sbjct: 55  DFLFYSNQKNQSIESNTIRSCSYETGCTWDRSK 87


>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 300 LPHACKCVLPAMCCQPCTSPIRVVLLPSPSGVGVIPA 190
           LPH   C +   C       + V L+P+P G G++ A
Sbjct: 172 LPHTVPCKVTGKCAS-----VMVRLIPAPRGTGIVSA 203


>AF045643-6|AAC02593.2|  570|Caenorhabditis elegans Hypothetical
           protein F58H7.2 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 42  LRSLKTSESWQQRSVCVRARCLNMDV 119
           LR +KT +SW +R V     C+ + V
Sbjct: 513 LRKMKTEDSWDRRVVTESKNCIGLPV 538


>Z92777-5|CAB07171.1|  409|Caenorhabditis elegans Hypothetical
           protein C17H1.7 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 56  DIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIVVAGITPTPLGEGKSTT 235
           D   L ++IGLC   VS   R  +K+  S +D L N     + +V  +    LG  +S  
Sbjct: 270 DASALESDIGLCEIIVSSINRKISKLQDSCID-LSNYAIADHRMVQEMQKNALGINESVR 328

Query: 236 LI 241
            I
Sbjct: 329 RI 330


>Z81500-3|CAB04095.1|  228|Caenorhabditis elegans Hypothetical
           protein F11D11.4 protein.
          Length = 228

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 128 KISLSVLDRLRNQRTGKYIVVAGITPTPLGEGKSTTLIGLVQG*QHIAGRTHLHACGNRV 307
           KISL   +R+ N    + +   G    PLG   +TT++ + +  +H  G +  +  GN  
Sbjct: 55  KISLVSNNRVVNGSWTRDVTSTGFYMKPLGSADNTTIVNIKRDTKH-TGFSGANVVGNLP 113

Query: 308 RG 313
            G
Sbjct: 114 NG 115


>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical
           protein T20G5.1 protein.
          Length = 1681

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 318 GRPLTRLPHACKCVLPAMCCQPCTSPIRVVL 226
           G PL  L     C +     QPCTS +  VL
Sbjct: 542 GEPLADLSQIIDCFMEVQAVQPCTSFLLEVL 572


>Z81055-5|CAB02894.1|  278|Caenorhabditis elegans Hypothetical
           protein F01G10.6 protein.
          Length = 278

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 258 QPCTSPIRVVLLPSPSGVGVIPATTMYFPVRWLRNLSRTDSE 133
           + C+ P   +   +P  VG   ATT YF     R L+   S+
Sbjct: 65  ESCSGPCLTMAFGNPDAVGTNQATTTYFVRGCHRTLTNAVSD 106


>Z80216-9|CAH10778.1|  403|Caenorhabditis elegans Hypothetical
           protein F10G8.9b protein.
          Length = 403

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = +2

Query: 56  DIGELAAEIGLCPSEVSQYGRTKAKISLSVLDRLRNQRTGKYIVVAGITPTPLG-EGKST 232
           D  E    IG C S++   G T  K+S       +++R   Y V   +   P G      
Sbjct: 87  DHNETLVNIGTCMSDLEHIGETAQKVSEG-----QSRRVSPYFVPRILNNLPAGYVAMKY 141

Query: 233 TLIGLVQG*QHIAGRTHLHACGNRVR 310
            + G V+     A  T LH  GN  R
Sbjct: 142 KMRGGVES-TSTACATGLHCIGNSFR 166


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical
           protein C35C5.1 protein.
          Length = 2962

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 219 SPSGVGVIPA-TTMYFPVRWLRNLSRTDSEIL 127
           S S +G +P   T + P R  RN+S  DS+++
Sbjct: 47  SQSEIGKLPEQNTFFLPGRVKRNISSNDSDVI 78


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
           protein C35C5.1 protein.
          Length = 2962

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 219 SPSGVGVIPA-TTMYFPVRWLRNLSRTDSEIL 127
           S S +G +P   T + P R  RN+S  DS+++
Sbjct: 47  SQSEIGKLPEQNTFFLPGRVKRNISSNDSDVI 78


>Z48621-6|CAA88544.1|  238|Caenorhabditis elegans Hypothetical
           protein R07B1.7 protein.
          Length = 238

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 348 PSSSTPFNAKGRPLTRLPHACKCVLPAMCCQPCTSPIRVVLLPSPS 211
           P+S+T       P+T    A    +P   CQ CT     V++  PS
Sbjct: 23  PTSTTDIPTSTTPMTT--SAPTTTMPRTVCQSCTLDATTVIMVHPS 66


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 219 SPSGVGVIPA-TTMYFPVRWLRNLSRTDSEIL 127
           S S +G +P   T + P R  RN+S  DS+++
Sbjct: 47  SQSEIGKLPEQNTFFLPGRVKRNISSNDSDVI 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,850
Number of Sequences: 27780
Number of extensions: 190887
Number of successful extensions: 623
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)