Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20288
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   4.2  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   5.6  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   5.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   7.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   9.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   9.8  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -3

Query: 273 PAMC-CQPCTSPIRVVLLP 220
           P  C C+PCTS     ++P
Sbjct: 110 PLECMCRPCTSVEEYAIIP 128


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 55  RHRRAGSRDRSVSERGVSIW 114
           R R+  SRD  ++E  + IW
Sbjct: 48  RRRQQLSRDLGLTEAQIKIW 67


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 55  RHRRAGSRDRSVSERGVSIW 114
           R R+  SRD  ++E  + IW
Sbjct: 48  RRRQQLSRDLGLNEAQIKIW 67


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 304 SQGPTFGVKGGA 339
           S GP FGV GG+
Sbjct: 66  SAGPIFGVIGGS 77


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 304 SQGPTFGVKGGA 339
           S GP FGV GG+
Sbjct: 156 SAGPIFGVIGGS 167


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 284 NAFFPRCAVNLAPALLEWC 228
           +AF   C V +  AL+E+C
Sbjct: 308 DAFMSVCTVFVFMALMEYC 326


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 278 FFPRCAVN 255
           F PRCAVN
Sbjct: 152 FHPRCAVN 159


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 59  IGELAAEIGLCPSEVSQYGRTKAKISLSV 145
           +G+ A + G+C  EVS    T    +L +
Sbjct: 117 VGKEACKQGVCTVEVSSENMTVTFANLGI 145


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 59  IGELAAEIGLCPSEVSQYGRTKAKISLSV 145
           +G+ A + G+C  EVS    T    +L +
Sbjct: 117 VGKEACKQGVCTVEVSSENMTVTFANLGI 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,384
Number of Sequences: 438
Number of extensions: 2085
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)