Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20283
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 29 0.47
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 2.5
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual 26 3.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 3.3
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 5.8
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 25 5.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.6
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 7.6
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 7.6
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 7.6
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 28.7 bits (61), Expect = 0.47
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 43 KELINVTVGKPLGQLLISNLLHLPCIEKVFPDSEPVI 153
+ L++ + K GQL I N + PC +FP+ PV+
Sbjct: 159 RPLVSASALKLEGQLCIYNYCNGPCYRCMFPNPTPVV 195
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 225 RRTVFCIRSYNETLAENNKLKITGSDFKFSSDLE 326
+RT IR Y ET+ EN K+ S K +++E
Sbjct: 92 KRTFLQIRKYLETIEENEFDKVRKSSDKLINEIE 125
>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 169 NLLKNAPKNISVIYGSNDKEGLF 237
NL+ N PK + IYGS + L+
Sbjct: 65 NLINNVPKELLSIYGSGKQSHLY 87
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 66 WETPWSTFNFEFITFTLHRESLPRF 140
W TP S EF F LHRE F
Sbjct: 122 WRTPNSLEEREFAPFVLHREYTGHF 146
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 344 ES*RILFWRKYHKLGNKND 400
ES LFWR++HK D
Sbjct: 168 ESLHTLFWREFHKAARNQD 186
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 25.0 bits (52), Expect = 5.8
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Frame = +1
Query: 82 QLLISNLLHLPCIEKVFPDSEPVITDLPINLLKNAPKNISVIYGSNDKEGLFFVSEVTMK 261
Q L LHL I K + + E + T LP+ + K SND + + + E +K
Sbjct: 85 QALQYKKLHLKTIIKNYEEKEHIYTALPLVSKEEFLKEHPEFKSSNDHDLMLAILEDELK 144
Query: 262 R*LKTTN*K*Q------GLIS-NFRQI*KLMRSHRKLKNFILEKIP 378
+ + K + LIS N + L + KL+ F+ +P
Sbjct: 145 ERQRLSTLKQELLKRKAALISENKAKRNALQKGDEKLQTFLRSSVP 190
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 148 RVPNRGRLSRCKVNVINSKLKVDQGVSQR*H 56
R+ + G SRC++ IN K ++ + SQR H
Sbjct: 1019 RLADAGIASRCEICEINDKNEIVKTRSQRIH 1049
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 401 NHSCFPAYGIFSKIKFFNFR 342
NHSC P I+S ++ FR
Sbjct: 409 NHSCSPNIAIYSAVRNHGFR 428
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 246 RSYNETLAENNKLKITGSDFKFSSDLETDEVTSKVKEFY 362
R Y TL E+N+L G + LE+ + T +VK Y
Sbjct: 128 REYLATLEEHNRLVKNGLKIREQWALESAKKTDEVKARY 166
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 7.6
Identities = 5/22 (22%), Positives = 14/22 (63%)
Frame = +3
Query: 12 IIRHICKNSIQRVDKCHRWETP 77
++++ C N ++ + CH++ P
Sbjct: 763 LVKNGCSNMVKHIQNCHKFNIP 784
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,702
Number of Sequences: 5004
Number of extensions: 39372
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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