Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20283
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36569| Best HMM Match : TSP_1 (HMM E-Value=2.9e-05)                 28   3.4  
SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_20464| Best HMM Match : RVT_1 (HMM E-Value=0.016)                   27   7.7  
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_36569| Best HMM Match : TSP_1 (HMM E-Value=2.9e-05)
          Length = 307

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 6   SRIIRHICKNSIQRVDKCHRWETPWSTF 89
           + +I+  CK+++Q+ D+   W+   +TF
Sbjct: 273 NNVIKEACKSNVQQTDRLDAWDVSKTTF 300


>SB_46603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 25 FAKTPYKELINVTVGKP 75
          FA+TPYK L+    GKP
Sbjct: 30 FAETPYKHLLTTNTGKP 46


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 85   LLISNLLHLPCIEKVFPDSEPVITDLPINLLKNAPKNISVIYGSNDK 225
            +L+ N   L C        EP   D PI    N+P+++S+I  S  K
Sbjct: 2096 ILVHNSRKLICPSHCEKSCEP---DCPIRCCPNSPRHVSIIVNSEPK 2139


>SB_20464| Best HMM Match : RVT_1 (HMM E-Value=0.016)
          Length = 357

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 273 NNKLKITGSDFKFSSD-LETDEVTSKVKEFYFGENTISWETRMILSD 410
           N    +  +DF+ + D +E   + + +++F FGEN I W  +++L+D
Sbjct: 225 NESYIVFAADFEKAFDSIEHSFIYATLRQFGFGENFIRW-IQVLLTD 270


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +1

Query: 136 DSEPVITDLPINLLKNAPKNISVIYGSNDKEGLFFVSEVTM 258
           +++ ++T+ P+N +KN  K I V++ +   EG++   +  +
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVL 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,058
Number of Sequences: 59808
Number of extensions: 261161
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)