Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20283
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical ...    33   0.10 
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    32   0.18 
U39472-1|AAK31395.1|  534|Caenorhabditis elegans Cytochrome p450...    31   0.31 
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    27   8.9  
AC006792-2|AAF60742.3|  406|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF101319-3|AAC69355.1|  331|Caenorhabditis elegans Hypothetical
           protein K08D9.5 protein.
          Length = 331

 Score = 33.1 bits (72), Expect = 0.10
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 234 VFCIRSYNETLAENNKLKITGSDFKFSSDLETDEVTSKVKE 356
           VFCI+  N+    N  +KI  +++   S LETD  TS + E
Sbjct: 45  VFCIKKLNQLDDANTMIKIIQNEYSIDSLLETDNETSALIE 85


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 124 KVFPDSEPVI-TDLPINLLKNAPKNISVIYGSNDKEGLFFVSEVTM 258
           K+FP+  PV+ TD P+N LKN  ++  + + + +   L+   +  +
Sbjct: 99  KIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVL 144


>U39472-1|AAK31395.1|  534|Caenorhabditis elegans Cytochrome p450
           family protein 23A1 protein.
          Length = 534

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 17/66 (25%), Positives = 37/66 (56%)
 Frame = +1

Query: 61  TVGKPLGQLLISNLLHLPCIEKVFPDSEPVITDLPINLLKNAPKNISVIYGSNDKEGLFF 240
           ++G+P+  + I +   LP ++    + + +   LPINLL+   ++I  I G N K+G   
Sbjct: 369 SIGQPM--IEIQHRTRLPYVQATINEIQRIANILPINLLRTVAEDIE-IDGYNFKKGDLI 425

Query: 241 VSEVTM 258
           + ++++
Sbjct: 426 IPQISI 431


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 67  GKPLGQLLISNLLHLPCIEKVFPDSEPVITDL-PINLLKNAPKNISVI 207
           G PLG+  +S +LH+ C E  +P  +P +  L P  L K   +N+  I
Sbjct: 64  GDPLGKSKLSVILHVKCSED-YPQRKPAVDLLDPQGLSKEDVQNLLTI 110


>AF016661-1|AAB66049.2|  514|Caenorhabditis elegans Hypothetical
           protein F02E11.2 protein.
          Length = 514

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 37  PY--KELINVTVGKPLGQLLISNLLHLPCIEKVFPDSEPVI 153
           PY  +EL+N   G+ LG  +I  +  + CI   F   +P+I
Sbjct: 467 PYNKEELVNTLKGRELGFFVIFYIFAVMCIVMAFEFFKPII 507


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 270 ENNKLKITGSDFKFSSDLETDEVTSKVKEF 359
           E +K+++    F    DLE +E T KV+EF
Sbjct: 153 EQSKVQLMEMRFHMPVDLENEEDTDKVEEF 182


>AC006792-2|AAF60742.3|  406|Caenorhabditis elegans Hypothetical
           protein Y50C1A.2 protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 249 SYNETLAENNKLKITGSDFKFSSDLETDEVTSKVKEFYFGENTISWETRMILSDF 413
           S  +T+  N K     ++F+ + +++TD V + V E    + TIS E   +L DF
Sbjct: 26  SETQTIETNKKDVECVANFQENKEVQTDSVDNGVGENVKKDITISKEVLNLLYDF 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,555,060
Number of Sequences: 27780
Number of extensions: 212064
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)