Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20283
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.076
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.076
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   1.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 0.076
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 163 PINLLKNAP-KNISVIYGSNDKEGLFFV 243
           P++LL+ A  K+  ++ G+N+ EG +F+
Sbjct: 360 PLDLLREADFKDTEILIGNNENEGTYFI 387


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 0.076
 Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 163 PINLLKNAP-KNISVIYGSNDKEGLFFV 243
           P++LL+ A  K+  ++ G+N+ EG +F+
Sbjct: 360 PLDLLREADFKDTEILIGNNENEGTYFI 387


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 136 DSEPVITDLPINLLKNAPKNISVIYGS 216
           + +P +TD   ++L  AP  I   YG+
Sbjct: 191 NGQPKLTDFGSSVLIGAPNEIDKFYGT 217


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 124 KVFPDSEPVITDLPINLLKNAPKNISV 204
           K+ PD    I   P+  L N PK+  +
Sbjct: 34  KIMPDILTAIGQTPLIKLNNIPKSYGI 60


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 356 ILFWRKYHKLGNKNDF 403
           +LFW+    L N N+F
Sbjct: 12  LLFWQNSASLENDNEF 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,440
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)