Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20282
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    30   0.17 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.22 
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    29   0.51 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    28   0.67 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   2.7  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   6.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   6.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   8.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.3  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   8.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.3  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 299 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 445
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +PP
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPP 111



 Score = 28.7 bits (61), Expect = 0.51
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 281 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 445
           +PP   +   T+ + PP T+   ++       +  ++T   P T  N+T T+ PP
Sbjct: 70  VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPP 124



 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 278 SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 445
           ++PP   T+  T+ + PP T+   ++ T        S+T + P T    T T+ PP
Sbjct: 83  TVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPP 136



 Score = 25.8 bits (54), Expect = 3.6
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 278 SLPPCWKTTEFTSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 445
           ++PP   +   T+ + PP T  NST + +     V T  +TV+ P T  NTT T+ PP
Sbjct: 95  TVPPT-TSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVVPPTTHVNTT-TVVPP 148


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 287 PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS-NTTGTLSPP 445
           P   T+  TS S PP  NST + +T  V   + SST   P   S ++TGT S P
Sbjct: 279 PTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 331



 Score = 29.9 bits (64), Expect = 0.22
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 287 PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS-NTTGTLSPP 445
           P   T+  TS S PP  NST + +T  V   + SST   P   S ++TGT S P
Sbjct: 333 PSTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 385



 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 278 SLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTV--SSTVI--APLTPSNTTGTLSPP 445
           S+PP   +T   + + PP ++ST  + T      +V  +ST +   PL  +N T + S P
Sbjct: 398 SIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVP 457


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 453 FVHGGLKVPVVFEGVSGAITVDDTVIT 373
           F H  +    V  G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 381 VITRTFRVIELQVLFVLGGHDLEVNSVVFQHGGKLPGDFXAGLSLE 244
           V T TF   E +++ +  GH   ++S++ Q    +   F  GLS E
Sbjct: 486 VFTSTFAQNESKIMSMASGHFYNIDSLLHQQNDAVKHTFLLGLSKE 531


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 296 KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 445
           +TTE T+    P T ++  S T  ++  T   T I P+ P N + ++S P
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAP 899


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 267 FXAGLSLESPNAILLW 220
           F  G SL SPNA+++W
Sbjct: 720 FEYGYSLSSPNALVVW 735


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 250 RQTSXKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRI 387
           R    ++ W +  +    R   ++ ++ED+Q+L L   K  +D +I
Sbjct: 73  RSKMQEIPWNYQDITIELRARIRLFASEDRQWLTL-TYKTKTDSKI 117


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 426  VVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSVVFQH 289
            ++ EG+S   +V++T     F V+      ++   DLEV S   Q+
Sbjct: 1383 MIKEGLSSKPSVNETFSKYVFPVLFAYYDIIMSAEDLEVRSRALQN 1428


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 271 SWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTAD 411
           +WK   ++E  R+++       KQYL   ++   + D  ++ D  +D
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSD 584


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 348 QVLFVLGGHDLEVNSVVFQHGGK 280
           +V +V  GH+ ++ S+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 IAPLTPSNTTGTLSPP 445
           + PL PS+ +G LSPP
Sbjct: 146 VHPLRPSHVSGPLSPP 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,091
Number of Sequences: 5004
Number of extensions: 37696
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)