Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20282
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           31   0.51 
04_01_0183 + 2079879-2080084,2080994-2081122,2081204-2081426,208...    30   1.2  
08_02_0272 + 15189617-15190276,15190361-15191107                       29   2.1  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    28   3.6  
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941...    27   6.3  
08_02_1198 + 25204896-25206755                                         27   8.3  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 146 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 250
           I  ++ V++ N   HHALKLI + +  +I  GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765


>04_01_0183 +
           2079879-2080084,2080994-2081122,2081204-2081426,
           2081569-2081824,2082358-2082550,2082602-2082815,
           2082912-2083025,2083284-2084000
          Length = 683

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 203 LIDQQNHNKIAFGDSKDKPAXKSPGSLPPCWKTTEFT 313
           L  ++N    A GD + KPA        PCW  T FT
Sbjct: 47  LAKEENGTITANGDKQQKPAADRGSYQSPCWTETIFT 83


>08_02_0272 + 15189617-15190276,15190361-15191107
          Length = 468

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 465 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSVVF 295
           HD++F HG L++P         + VDDT   + F ++  + L   G +  EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 284 PPCWKTTEFTSRS-CPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 442
           PP   TT  T+ +  PP T S  S      +  T SSTV   +  + TT T SP
Sbjct: 256 PPAAPTTTKTAAAPAPPPTASWESFDLLSSMPSTSSSTVTTTMAAATTTTTTSP 309


>01_04_0068 +
           15693131-15693533,15693604-15693803,15693879-15694162,
           15694251-15694428
          Length = 354

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 163 CXAHKQKGPSRPXVDRPTKPQQNCIR*LQRQTSXKVSWKFTPVLENNRVYFKIMSTEDKQ 342
           C +  +  PS      P K  +   R ++RQ   +   K  P+  + + +FK MST +K+
Sbjct: 112 CTSQDKVSPSSTAC--PHKGNEEGEREVKRQLKPRSPEKKIPIDPSVKNFFKGMSTTNKE 169

Query: 343 YLKLDN 360
            LKL +
Sbjct: 170 ALKLSD 175


>08_02_1198 + 25204896-25206755
          Length = 619

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 226 QNCIR*---LQRQTSXKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYG 396
           +NC+R    LQ + + K S  +  VL    +YF+       Q     + +G SDD  IY 
Sbjct: 257 RNCVRKSKCLQDKMTAKESLIWLGVLRREEIYFRSSDNVGSQITHRSSREGKSDD--IYS 314

Query: 397 DS 402
            S
Sbjct: 315 SS 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,919
Number of Sequences: 37544
Number of extensions: 241750
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)