Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20282
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          30   0.91 
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   8.5  

>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 175 KQKGPSRPXVDRPTKPQQNCIR*LQRQTSXKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 354
           + +   R   +R T P +  +  +  ++   V   FT + E      K MS E+KQ  K 
Sbjct: 169 RHRHSERRSANRTTAPIRLSVIGITSESRLHVFNVFTEMEEKIDEKVKEMSLEEKQPQKK 228

Query: 355 DNTKGSSDDRIIYGD 399
           DN KG S+ +   GD
Sbjct: 229 DNQKGKSEKKKGKGD 243


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = +2

Query: 257 PAXKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 436
           P+ K P +  P   TT F S   P  T  T +++       T   T     TPS    T+
Sbjct: 262 PSTKQPTT--PQLTTTTFPSTKQPTTTQQTTATLPSTKQPTTTQQTTATLPTPSTKPTTV 319

Query: 437 SP 442
           SP
Sbjct: 320 SP 321


>SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 287 PCWKTTEFTSRS--CPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 442
           PC+  T F   +   PP T    + +   +L MTV   +IA  TP  TT  ++P
Sbjct: 138 PCFLITAFALLTFVLPPNTGERVTLVITTLLAMTVFMLMIAENTP--TTSDVTP 189


>SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 571

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 244 LQRQTSXKVSWKFTPVLENNRVYFKIMSTEDKQY 345
           +QR  S   SW F   L  +R    +++TED+ Y
Sbjct: 386 VQRYDSKDNSWSFVASLNESRTRLCVVATEDQIY 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,137
Number of Sequences: 59808
Number of extensions: 290829
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)