Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20282
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.58 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.2  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 92  TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 235
           T + K+I K   P + ++I     V ++   DH    L+D   +  IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 360 VIELQVLFVLGGHDLEVNSVVFQHGGKLPGD 268
           VI +  + V    +L+  +V+F+HG ++P +
Sbjct: 3   VIAILAMVVGVQAELKQINVIFRHGDRIPDE 33


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 297 KQQSLLQDHVHRGQTVPEAR*HERF 371
           + Q ++Q HV    T+PE +   RF
Sbjct: 386 RNQDVVQTHVLTIHTIPEVKVTPRF 410


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -2

Query: 321 DLEVNSVVFQHGGKLPGD 268
           +L+  +V+F+HG ++P +
Sbjct: 1   ELKQINVIFRHGDRIPDE 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,775
Number of Sequences: 438
Number of extensions: 2409
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)