Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20282
(496 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 33 0.11
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 33 0.11
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 29 2.3
At1g64150.1 68414.m07267 expressed protein contains Pfam profile... 29 2.3
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 4.0
At3g53440.2 68416.m05898 expressed protein 27 5.3
At3g53440.1 68416.m05897 expressed protein 27 5.3
At2g31380.1 68415.m03835 zinc finger (B-box type) family protein... 27 5.3
At3g17550.1 68416.m02241 NLI interacting factor (NIF) family pro... 27 6.9
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone... 27 9.2
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 33.1 bits (72), Expect = 0.11
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +1
Query: 145 DLHRADCXAHKQKGPSRPXVDRPTKPQQNCIR*LQRQTSXKVSWKFTPV---LENNRVY- 312
DL R+ AH + V +PT ++ IR RQT+ +V P L+ +R Y
Sbjct: 1757 DLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVDGSEMPAAQPLQVDRSYR 1816
Query: 313 FKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHH 426
K+ + D + D + SS R + A T K H
Sbjct: 1817 SKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVASTSKLH 1854
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 33.1 bits (72), Expect = 0.11
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +1
Query: 145 DLHRADCXAHKQKGPSRPXVDRPTKPQQNCIR*LQRQTSXKVSWKFTPV---LENNRVY- 312
DL R+ AH + V +PT ++ IR RQT+ +V P L+ +R Y
Sbjct: 1756 DLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVDGSEMPAAQPLQVDRSYR 1815
Query: 313 FKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHH 426
K+ + D + D + SS R + A T K H
Sbjct: 1816 SKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVASTSKLH 1853
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 28 SREAXDRKRQEEHHGLRLPVMDKGWKGNRQILLSHPV 138
SR ++E G +P DK WKG + + +P+
Sbjct: 563 SRSPIGNDQKESDFGYSIPSTDKQWKGENRADIEYPI 599
>At1g64150.1 68414.m07267 expressed protein contains Pfam profile
PF01169: Uncharacterized protein family UPF0016
Length = 370
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 414 GVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSV 301
G G +T+ V+ RTF ++ + F GG DL ++ +
Sbjct: 197 GALGIMTIISVVLGRTFHYVDEVLPFRFGGTDLPIDDI 234
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 4.0
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +2
Query: 239 GDSKDKPAXKSPGSLPPCWKTTEFTSRSCPPRTNST*S-SITRKVLVMTVSSTVIAPLTP 415
G P +PG PP TT T PP + +T S + ++ S + P P
Sbjct: 479 GSPPSSPTTPTPGGSPPSSPTTP-TPGGSPPSSPTTPSPGGSPPSPSISPSPPITVPSPP 537
Query: 416 SNTTGTLSPP 445
S T SPP
Sbjct: 538 STPTSPGSPP 547
>At3g53440.2 68416.m05898 expressed protein
Length = 512
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +2
Query: 242 DSKDKPAXKSPGSLPPCWKTTEFTSRSCP------PRTNST*SSITRKVLVMTVSSTVIA 403
DS+ K S P ++ +SR CP P+T ST SS T+ TVSS+
Sbjct: 68 DSRSKKLNISKDGFPSLRRSLRLSSRECPEVNKEKPKTASTSSSRTKS--STTVSSSCAL 125
Query: 404 PLTPSNTTG 430
+P ++G
Sbjct: 126 RRSPRFSSG 134
>At3g53440.1 68416.m05897 expressed protein
Length = 512
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +2
Query: 242 DSKDKPAXKSPGSLPPCWKTTEFTSRSCP------PRTNST*SSITRKVLVMTVSSTVIA 403
DS+ K S P ++ +SR CP P+T ST SS T+ TVSS+
Sbjct: 68 DSRSKKLNISKDGFPSLRRSLRLSSRECPEVNKEKPKTASTSSSRTKS--STTVSSSCAL 125
Query: 404 PLTPSNTTG 430
+P ++G
Sbjct: 126 RRSPRFSSG 134
>At2g31380.1 68415.m03835 zinc finger (B-box type) family protein /
salt tolerance-like protein (STH) contains Pfam profile
PF00643: B-box zinc finger; identical to cDNA B-box zinc
finger protein STH GI:12698721, SP|Q9SID1 Salt
tolerance-like protein (Arabidopsis thaliana)
Length = 238
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 212 QQNHNKIAFGDSKDKPAXKSPGSLPPCWKTTEFTSRS 322
++NH + S KP + P + P W T EF S S
Sbjct: 116 EKNHFDPSNQQSLSKPPTQQPAAPSPLWATDEFFSYS 152
>At3g17550.1 68416.m02241 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 296
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 289 VLENNRVYF--KIMSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKHH 426
+++ R+YF ++++ ++ Y+K + + + ++ D T+D + HH
Sbjct: 169 LIDPKRIYFGDRVITRDESPYVKTLDLVLAEERGVVIVDDTSDVWTHH 216
>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
putative / oxoglutarate decarboxylase, putative /
alpha-ketoglutaric dehydrogenase, putative similar to
SP|P20967 2-oxoglutarate dehydrogenase E1 component,
mitochondrial precursor (EC 1.2.4.2)
(Alpha-ketoglutarate dehydrogenase) {Saccharomyces
cerevisiae}; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF00676:
Dehydrogenase E1 component
Length = 1017
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 267 FXAGLSLESPNAILLW 220
F G S+ESPN+++LW
Sbjct: 713 FELGYSMESPNSLVLW 728
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,286
Number of Sequences: 28952
Number of extensions: 201646
Number of successful extensions: 624
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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