Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20281
         (418 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   3.6  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   6.4  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   6.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   8.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   8.4  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 234 TLLVLFLLAVPEYYNIYIIF 293
           TL +LFL  +  +Y+ +IIF
Sbjct: 203 TLHLLFLPCIYYFYSAFIIF 222



 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 234 TLLVLFLLAVPEYYNIYIIF 293
           T+ +LFLL +  ++  +IIF
Sbjct: 157 TVHLLFLLCIYHFFCAFIIF 176


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 4   LNYCSLNLTHQNRIYRICFIQIRWCYVLITRVN 102
           LN+ + NL  +N  ++   +    C V+ T V+
Sbjct: 258 LNFITNNLKSENEEFKEKLLAANLCLVIYTLVS 290


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 4   LNYCSLNLTHQNRIYRICFIQIRWCYVLITRVN 102
           LN+ + NL  +N  ++   +    C V+ T V+
Sbjct: 258 LNFITNNLKSENEEFKEKLLAANLCLVIYTLVS 290


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 243 PITFYAKINPTLTNLASKNLNTVNNSXLNEVKSNF 139
           P T +  + P+LT LAS             +KS++
Sbjct: 373 PETMHMGMGPSLTPLASPGCGPGQGGLQPTIKSDY 407


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 243 PITFYAKINPTLTNLASKNLNTVNNSXLNEVKSNF 139
           P T +  + P+LT LAS             +KS++
Sbjct: 373 PETMHMGMGPSLTPLASPGCGPGQGGLQPTIKSDY 407


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,485
Number of Sequences: 336
Number of extensions: 1344
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)