Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20281
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   3.6  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    25   4.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   6.2  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.2  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 161 NXELFTVFRFLDAKLVNVGLILA*NVIG 244
           N  L+T F F+  K V VGL+L  + +G
Sbjct: 366 NNSLYTSFNFITEKPVIVGLLLFSDALG 393


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 219 NPTLTNLASKNLNTVNNSXLNEVKSNFSKDKFYYTTTXKINP 94
           N  L++  + N   +NN  L E K +  KD+ +       NP
Sbjct: 32  NVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNP 73


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 234 FYAKINPTLTNLASKNLNTVNNSX-LNEVKSNFSKDKFYYTTT 109
           +Y+   P     AS+   T +    LNE+ + F  D F+ TTT
Sbjct: 48  YYSDGKPMNQTEASQMKGTFSRDFSLNEMNNEFITDSFFCTTT 90


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 219 NPTLTNLASKNLNTVNNSXLNEVKSNFSKDKFYYT 115
           NP+ T+   + L  ++   L EV+S F K +  YT
Sbjct: 116 NPSETSPEIERLQVLSQINLPEVRSKFHKKEIDYT 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,832
Number of Sequences: 5004
Number of extensions: 20627
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)