Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20281
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960...    29   2.0  
08_01_0024 + 180749-180872,181826-181880,181936-182025,182075-18...    27   8.0  

>07_03_1651 -
           28395369-28395436,28395524-28395575,28395857-28396092,
           28396362-28396419,28396509-28396577,28396686-28396791,
           28397104-28397171,28397266-28397385,28398144-28398231,
           28399433-28399534,28399699-28399757,28399866-28400003,
           28400222-28400473,28400508-28400593,28401061-28401165,
           28402351-28402516
          Length = 590

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 356 CFNRNFSKXLXXHFXGIL*FTKNNINIIVL 267
           CFN    K L  H   +  F + N++IIVL
Sbjct: 75  CFNEKAKKLLELHLASVTIFVRINVSIIVL 104


>08_01_0024 +
           180749-180872,181826-181880,181936-182025,182075-182426,
           182913-183000,183162-183294,183394-184089,184305-184368,
           184489-184578
          Length = 563

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 210 LTNLASKNLNTVNNSXLNEVKSNFSKDKF-YYTTTXKINPGN 88
           + ++ SKN++  +N  + +++SNF   KF  Y T    N G+
Sbjct: 261 IISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGS 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,800,613
Number of Sequences: 37544
Number of extensions: 99204
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)