Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20281
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)               27   6.2  
SB_36710| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)
          Length = 318

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -2

Query: 261 LLIKTKPITFYAKINPTLTNLASKNLNTVNNSXLNEVKSNFSKDKFYYTTTXKINPGN*Y 82
           +L KT P      + PT+ +   +NL+ V +  L  +K      +F Y +  K   G  +
Sbjct: 59  VLSKTYPRDEQTNVTPTILSKVGRNLHHVKDHPLKILKDQI--HEFVYDSYRKWGNGPMF 116

Query: 81  ITPPNLNKTNSV 46
            T  NL+   +V
Sbjct: 117 TTIDNLSPVVTV 128


>SB_36710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 213 TLTNLASKNLNTVNNSXLNEVKSNFSKDKFYYTTTXKINPG 91
           TL+N   KN+N VNN      + +F+        T K + G
Sbjct: 87  TLSNTGRKNINNVNNKYKKTTQLHFTYQDTKVNCTKKFDGG 127


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 270  TLGLLIKTKPITFYAKINPTLTNLASKN 187
            T+  L  T+ +T Y ++NPT T LAS N
Sbjct: 1048 TVQALPVTENVTAYPRLNPTPTYLASVN 1075


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 222 INPTLTNLASKNLNTVNNSXLNEVKSNFSKDKFYYTTTXKINPGN*YITPPN 67
           IN T T+  ++N NT   S L     + SK +  Y T   I P   Y+T  N
Sbjct: 207 INSTPTDPGTRN-NT-KESPLRVYSDSISKKRIQYNTIYYIAPARSYLTSVN 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,165,178
Number of Sequences: 59808
Number of extensions: 126810
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)