Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20281
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    30   0.59 
Z78018-2|CAB01447.1|  434|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z66524-4|CAC70103.1|  297|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF181619-1|AAF01208.1|  297|Caenorhabditis elegans putative ribo...    26   9.5  

>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -2

Query: 222 INPTLTNLASKNLNTVNNSXLNEVKSNFSKDKFYYTTTXKINPGN*YITPPNLNKTNSVN 43
           I  TL  + S+N     N  +  VK+NF+ +   YT T   N  + Y T  NL    +  
Sbjct: 610 IGSTLV-ITSENNEKKKNGVMEIVKNNFTNNGGIYTVTVDTNLHDAYFTDNNLKGNENSG 668

Query: 42  PVL 34
            VL
Sbjct: 669 AVL 671


>Z78018-2|CAB01447.1|  434|Caenorhabditis elegans Hypothetical
           protein W07G4.2 protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 1   PLNYCSLNLTHQNRIYRICFIQIRWCYV 84
           PL +   NLT   + +R C +   WCYV
Sbjct: 352 PLKFSCDNLTIVEKQHRTCCLAHGWCYV 379


>AF100670-2|AAN73857.3|  554|Caenorhabditis elegans Hypothetical
           protein M4.1 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 273 STLGLLIKTKPITFYAKINPTLTNLASKNLNTVNNSXLNEVKSNFSK 133
           +T  L+ K K +T Y +    LT+L  KNL    +  +NE  S  S+
Sbjct: 320 ATADLIEKQKVVTTYEE---KLTDLQQKNLKLSKSCVINETASGLSR 363


>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 258 LIKTKPITFYAKINPTLTNLASKNLNTVNNSXLNEVKSNFS 136
           ++K + +   +K N +L  +  KN+N  +N  L+  KSN S
Sbjct: 153 MLKMEELNAKSKQNTSLYQIQMKNINDSHNMQLSIEKSNAS 193


>Z66524-4|CAC70103.1|  297|Caenorhabditis elegans Hypothetical
           protein T13H5.7 protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 243 PITFYAKINPTLTNLASKNLNTVNNSXLNEVK 148
           P+ + A I+P   N+  KNL   ++  LNE K
Sbjct: 37  PMVYAAAISPLDQNVELKNLGVDDSKALNEAK 68


>AF181619-1|AAF01208.1|  297|Caenorhabditis elegans putative
           ribonuclease H2 largesubunit protein.
          Length = 297

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 243 PITFYAKINPTLTNLASKNLNTVNNSXLNEVK 148
           P+ + A I+P   N+  KNL   ++  LNE K
Sbjct: 37  PMVYAAAISPLDQNVELKNLGVDDSKALNEAK 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,184,390
Number of Sequences: 27780
Number of extensions: 106572
Number of successful extensions: 209
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)