Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20275
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   4.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 144 PSRHYRSGLR 115
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 207 RWSCLWASGHQAGCRAPGSKAPSRHYR 127
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 236 LQRDRSCKHVPRAVFVDLEPTVVDEVRTGTYRQL 337
           L+  R+  H+    + D+EPTV         RQL
Sbjct: 234 LEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 178 MARCPQTRPSGVETILSTLSSARPE 252
           +A+ P      + T+ ST+SSA+PE
Sbjct: 7   VAQLPHHLSPNMPTMDSTVSSAKPE 31


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 PTDKTIGGGDDSFNTFFSETGAAST 263
           PT+ TIGGG  + +   + + AA+T
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAAT 303


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 PTDKTIGGGDDSFNTFFSETGAAST 263
           PT+ TIGGG  + +   + + AA+T
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAAT 303


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 189 PTDKTIGGGDDSFNTFFSETGAAST 263
           PT+ TIGGG  + +   + + AA+T
Sbjct: 279 PTEVTIGGGGTTSSRRTTGSRAAAT 303


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 460 VSELADSVQNQINDFLS 410
           V ELA+S +  IND L+
Sbjct: 64  VKELANSAKRDINDVLN 80


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = -1

Query: 449 CGFCPKPNQRFPFQWCSDHGHSCWPH 372
           C  C +    +    C D G   WPH
Sbjct: 560 CDQCEEYEYVYDEYTCMDCGPGKWPH 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,992
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)