Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20272
         (436 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   8.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    20   8.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   8.9  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 249 AGALCHSXLLLPW*PP 296
           AG LC++ L LP  PP
Sbjct: 167 AGFLCNNYLPLPQVPP 182


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 221 SSGCASCRYSR*AETEH 171
           S GC +C Y    E+ H
Sbjct: 33  SQGCKACGYHSPLESNH 49


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 250 PAHCVTVDCCC 282
           PA CV  DC C
Sbjct: 165 PAVCVLPDCFC 175


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 337 RSRIGPFLFY 366
           R R+ P+LFY
Sbjct: 115 RDRVNPYLFY 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,487
Number of Sequences: 336
Number of extensions: 1657
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)