Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20272
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.54 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   2.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   3.8  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.0  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   6.7  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    24   8.8  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   8.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   8.8  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    24   8.8  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 28.3 bits (60), Expect = 0.54
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 132 IXQHRRPRLPLMQLEAPCSFNFCSLRA 52
           I Q     LP + L +PCSF  CSLRA
Sbjct: 48  IAQKSNISLPFLTL-SPCSFTICSLRA 73


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +2

Query: 134 WHW-GSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 241
           W W GSVD  SG         N  R  S   TS+LR+
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQ 75


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 65  QKLKEHGASSCISGKRGRRCXNIWHWGS 148
           Q   E  A +C  G  G  C  +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 320 HPFLDIAPGSDXFCFIWN*NA 382
           HP   + P  + FC IW+ NA
Sbjct: 412 HPLRSVIPLDNIFCNIWSDNA 432


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 168 EPLMESTDPQCHIXQHRRPRLPLMQL-EAPCSF 73
           +P   +TD Q ++ +H  PRLP   + + P SF
Sbjct: 506 DPDPSNTDTQWNVEEHINPRLPEGSINDYPSSF 538


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 113 GRRCXNIWHWGSVDSISGSRARFQLSGNSG 202
           G  C N+W     + + G R  + + G  G
Sbjct: 56  GEICFNVWDTAGQEKLGGLRDGYYIQGQCG 85


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 311 HHLMAWGLPWQQQSTVTQC 255
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 219 QRLCFLPLFPLS*NRAREPLMESTDPQCHIXQHRRPRLPLMQLEAP 82
           +++ FL L PLS    ++  +  ++P+    QH++  L  ++L  P
Sbjct: 135 RKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQILLKKLKLHFP 180


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 327 NG*CLASPHGVGATMAAAVXCDTMRRPLNFRSMLVQQRLCFLPL 196
           NG  L  P G GA +A A  C  +   ++F    + +RL F P+
Sbjct: 169 NGTKLPCPDGYGAFLATACVCSLLEIFMSFIPPRILKRL-FPPI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,017
Number of Sequences: 5004
Number of extensions: 24934
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)