Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20272
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    30   0.83 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   5.9  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   7.8  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 92   SCISGKRGRRCXNIW--HWGSVDSISGSRARFQLSGN 196
            +C SG +G RC      HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +2

Query: 74   KEHGASSCISGKRGRRCXNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 220
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC 1186


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +2

Query: 74   KEHGASSCISGKRGRRCXNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 220
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC 1186


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 333  SRNG*CLASPHGVGATMAAAVXCDTMRRPLNFRS 232
            SRN  C+++  G G T+   V CD  +RP + R+
Sbjct: 1445 SRNVTCVSAEDG-GRTILKDVDCDVQKRPTSARN 1477


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 333  SRNG*CLASPHGVGATMAAAVXCDTMRRPLNFRS 232
            SRN  C+++  G G T+   V CD  +RP + R+
Sbjct: 1445 SRNVTCVSAEDG-GRTILKDVDCDVQKRPTSARN 1477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,646,739
Number of Sequences: 27780
Number of extensions: 149175
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)