Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20271
         (317 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   4.1  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    20   5.5  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   7.2  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    20   7.2  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 228 IRRFTASLITSPFFSFRYSEH 166
           +RR   SL  S  FS + SEH
Sbjct: 147 LRRLEMSLEKSGLFSSKTSEH 167


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
          protein.
          Length = 366

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -3

Query: 78 ALEASAHTARTKANKVSLILARW 10
          AL  S H    K +K+    A W
Sbjct: 11 ALLISTHQTEAKTDKILCFFASW 33


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 69  LLTPHLHQELMTYWRSSC 122
           LLT  + +EL   WR  C
Sbjct: 153 LLTLFIKEELDLVWREVC 170


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 226 QTLHGFLDNLSLLFLQIF 173
           +T +GF+    LLFL IF
Sbjct: 112 RTFYGFVIVAHLLFLVIF 129



 Score = 19.4 bits (38), Expect = 9.5
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 133 VTHIQLLRQYVISSWC 86
           V H+  L  +V++ WC
Sbjct: 120 VAHLLFLVIFVLNIWC 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,965
Number of Sequences: 336
Number of extensions: 1172
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5942776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)