Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20271
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   1.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   1.6  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   1.6  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   2.1  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   8.5  

>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 244 EHHGFAYQLWTKDGK 288
           EHH F Y  WT+ GK
Sbjct: 292 EHHDFPYVAWTRIGK 306


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 210 SLITSPFFSFRYSEHLAIXVSYSXMXSLIYSCSASTSSV 94
           SL+ S FFS  YSE   +   +  + + IYS S S  S+
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/71 (22%), Positives = 30/71 (42%)
 Frame = -3

Query: 252 MVFLXPFSIRRFTASLITSPFFSFRYSEHLAIXVSYSXMXSLIYSCSASTSSVLGASVAL 73
           M F    ++   T   + +PF   R+  HL      S + S +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 72  EASAHTARTKA 40
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 153 VSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANKVSLI 22
           ++YS M  L+Y+ S + +S+  A + L+  + T   + N VSLI
Sbjct: 310 LNYS-MKKLLYNASFAITSLFNALLILDPKSSTFIFQENVVSLI 352


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 74  NATLAPRTDDVLAEQLYMSDXIXEYETXIAKCSEYLKEKKGEVIKEA 214
           N T+A + D  L+   ++S  +   E     CS     K+ EV+ ++
Sbjct: 223 NNTVAVKQDHKLSANTFLSSPVKLIERESNSCSTISINKEDEVVPKS 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,170
Number of Sequences: 5004
Number of extensions: 19152
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)