Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20271
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0618 - 16262826-16263097,16263111-16263183 28 1.4
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 1.8
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797... 27 4.2
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 26 5.6
04_01_0276 + 3658852-3660894 26 5.6
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 26 7.4
07_03_0710 - 20873420-20874745 26 7.4
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 26 7.4
11_06_0198 - 21158350-21159528 25 9.7
09_03_0194 + 13362503-13362627,13363247-13363343,13363404-13363460 25 9.7
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 25 9.7
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 25 9.7
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 97 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 11
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 145 IRDRYRQML*ISEGKEGRGYQGSR-EASDRKRXEEHHGFAYQLWTKDGKEIV 297
I+D+YR+M+ G G ++G R + + ++ + + W + G+ V
Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTV 217
>01_07_0312 +
42677752-42678561,42678701-42678910,42679597-42679704,
42679915-42680010,42680090-42680182,42680276-42680386,
42680482-42680514,42680592-42680642,42680960-42681037,
42681145-42681165
Length = 536
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 162 AIXVSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANK 34
A+ + S M ++ + C+AS +S + ALE A ++ NK
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNK 507
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 66 WLLTPHLHQELMTYWRSS 119
WLL HLH++ TYW S+
Sbjct: 845 WLL--HLHKDFNTYWESN 860
>04_01_0276 + 3658852-3660894
Length = 680
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -3
Query: 213 ASLITSPFFSFRYSEHLAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANK 34
AS + F R + I ++Y+ + + +AST + +G+S AL T +
Sbjct: 285 ASFLLFHFSGKRGHSRVDITITYTLLAGALLIETASTLNAVGSSWALSYLCKTEWSWLRH 344
Query: 33 VSLILARW 10
+L RW
Sbjct: 345 AALCARRW 352
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 25.8 bits (54), Expect = 7.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 153 VSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANKVSLI 22
+S++ S + C+AST +LGA AL + T R K LI
Sbjct: 330 ISHAGSLSNLAKCAASTLQILGAEKALFRALKT-RGNTPKYGLI 372
>07_03_0710 - 20873420-20874745
Length = 441
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 124 IQLLRQYV-ISSWCKCGVRSQRTHGEDEG 41
I LL YV ISS GVR + TH +D G
Sbjct: 8 ILLLLPYVAISSTASHGVRLELTHADDRG 36
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 33 LCLPSSSPCVRWLLTPHLHQELMTYWRSSC 122
LC P + +RW TP + +++ W+ C
Sbjct: 204 LCTPQPT-IIRWSTTPPVSADVLHQWKGFC 232
>11_06_0198 - 21158350-21159528
Length = 392
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 187 KEGRGYQGSREASDRKRXEEHH 252
+E Y G RE RKR + HH
Sbjct: 292 EEDHNYGGEREQHCRKRCQHHH 313
>09_03_0194 + 13362503-13362627,13363247-13363343,13363404-13363460
Length = 92
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 181 EGKEGRGYQGSREASDRKRXEE-HHGFAYQLWT 276
EGKE +G +E S+ R E+ + GF Y+ WT
Sbjct: 12 EGKEKKG----KEGSEGNRGEDGNEGFDYRPWT 40
>08_02_0269 + 15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 KEGRGYQGSREAS-DRKRXEEHHGFAYQLWTKDGKE 291
+ G GY G DR +EHH AY+ T G+E
Sbjct: 1238 QSGCGYHGMDTLPVDRYYPQEHHNGAYRPQTNFGEE 1273
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 77 ATLAPRTDDVLAEQLYMSDXIXEYETXIAKCSEYLKEKKGEVIKEAVKRLIENGXRNTMA 256
A L DD A+ M + I E + + + YL+ GE+ +E VKRLI G +
Sbjct: 252 ADLQEMADDYKAQ---MMETIVELDDDVMET--YLEG--GEIDEETVKRLIRKGTISASF 304
Query: 257 SPTSYGQRMERK 292
P G + K
Sbjct: 305 VPVLCGSAFKNK 316
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,510,903
Number of Sequences: 37544
Number of extensions: 142521
Number of successful extensions: 428
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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