Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20271
(317 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.3
SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07) 27 4.4
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5) 26 5.8
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057) 26 5.8
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3) 26 5.8
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061) 26 5.8
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 26 5.8
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 26 5.8
SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3) 26 7.6
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 176 YLKEKKGEVIKEAVKRLIENGXRNTMASPTS 268
++ KK +IKEA+KR+++N R + TS
Sbjct: 175 FVDGKKLRMIKEAIKRILKNNRRLKIPKVTS 205
>SB_21129| Best HMM Match : Pkinase (HMM E-Value=2.5e-07)
Length = 786
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 167 CSEYLKEKKGEVIKEAVKRLIENGXRNTMASPT 265
C E+L++K G+ I V R+ NG + ++ P+
Sbjct: 425 CLEFLQQKGGQSIVTEVIRIASNGMKISVYQPS 457
>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
Length = 235
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 117 CSASTSSVLGASVALEASAHTARTKANKVSLIL----ARWLS 4
CS + S G++ ++EAS+ RT A+ ++ A W+S
Sbjct: 43 CSGGSKSCCGSASSIEASSIVTRTHASTAFMVAGSNNAEWIS 84
>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
Length = 643
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 226 DRKRXEEHHGFAYQLWTKDGK 288
D + + HG A LWT+D K
Sbjct: 355 DGSKSSDDHGIAQYLWTRDAK 375
>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/58 (22%), Positives = 29/58 (50%)
Frame = +2
Query: 98 DDVLAEQLYMSDXIXEYETXIAKCSEYLKEKKGEVIKEAVKRLIENGXRNTMASPTSY 271
+ ++A++ D EY++ + K Y ++ GE+IK+ + G N ++ P +
Sbjct: 169 EKLMADKKLPEDKRNEYQSVLNKIDNYNMQELGELIKKYDAKATTTG--NDLSDPVEF 224
>SB_44418| Best HMM Match : TP2 (HMM E-Value=4.3)
Length = 148
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 130 THIQLLRQYVISSWCKCGVRSQRTHGEDEGKQSQ 29
TH L++ + SW CG +R +D G +SQ
Sbjct: 103 THSGLIK--TLHSWSACGEIKERNQHKDRGAKSQ 134
>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
Length = 503
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 179 LKEKKGEVIKEAVKRLIENGXRNTMASPTSYGQ 277
++++K ++ K+ KRLIE RN + +GQ
Sbjct: 164 VEQEKEQMRKDFEKRLIEEKERNVQGTMAEFGQ 196
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 127 E*RHX*IRDRYRQML*ISEGKEGRGYQGSREASDRKRXEEHHGFAYQLWTKDGKEIVK 300
E RH + RQ ++GK+ + +EA +R+R E+ Q KD K+ +K
Sbjct: 911 EERHLREEEEERQRKEAAKGKKEEEEKKEKEAEERRRAEDEERIKKQA-EKDRKKAIK 967
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 268 TGRRSHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFG 161
TG+R G P + + + GF D+ F++ ++ FG
Sbjct: 703 TGKRKRGRPRTIKREDIEGFGDSEIRRFVKSYKKFG 738
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 268 TGRRSHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFG 161
TG+R G P + + + GF D+ F++ ++ FG
Sbjct: 808 TGKRKRGRPRTIKREDIEGFGDSEIRRFVKSYKKFG 843
>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
Length = 445
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 316 GWGSXI*RFP-FHPLSITGRRSHGVPLAVFDQTLHGFLDNLSLLF 185
G+G + P FH +SI+G + GVP+ Q ++ L + F
Sbjct: 151 GYGGSLDSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRF 195
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 77 ATLAPRTDDVLAEQLYMSDXIXEYETXIAKCSEYLKEKKGEVIKEAVKRLIENGXRNTMA 256
AT+AP ++ V E +Y+S E E+ + LKE+ ++ K+ + T
Sbjct: 131 ATVAPPSNAVPDEDVYLSSEESEIESDEEEKERRLKEQSMFGMQAKPKQDHATARKRTKL 190
Query: 257 SPTSYGQRMERKS 295
P + +RK+
Sbjct: 191 QPAKVPEPKKRKA 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,074
Number of Sequences: 59808
Number of extensions: 155667
Number of successful extensions: 463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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