Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20271
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    28   1.3  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   2.2  
U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucos...    27   2.9  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    27   2.9  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    27   2.9  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    27   2.9  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    27   3.9  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    27   3.9  
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    26   5.1  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    26   5.1  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z66522-1|CAA91406.3|  425|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    25   8.9  
U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucos...    25   8.9  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    25   8.9  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    25   8.9  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 119 LYMSDXIXEYETXIA-KCSEYLKEKKGEVIKEAVKRLIE 232
           LYM   + +Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 15  APR*D*LCLPSSSP-CV-RWLLTPHLHQELMTYWRSSCI*VTXLXNTRPXS 161
           APR D +C+PS SP CV ++ L P   + + T   ++C  VT L  +RP S
Sbjct: 259 APRCDSMCMPSCSPSCVQQYSLCPQQCRPMCT---NAC--VTNLQVSRPVS 304


>U53332-7|AAM15582.1|  379|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform c protein.
          Length = 379

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = -3

Query: 165 LAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANKVSLIL 19
           +A  +S +   +++ + ++STSS++GA+ A  A A  + + +   S +L
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLL 55


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = -3

Query: 165 LAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANKVSLIL 19
           +A  +S +   +++ + ++STSS++GA+ A  A A  + + +   S +L
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLL 55


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = -3

Query: 165 LAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANKVSLIL 19
           +A  +S +   +++ + ++STSS++GA+ A  A A  + + +   S +L
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLL 55


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = -3

Query: 165 LAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAHTARTKANKVSLIL 19
           +A  +S +   +++ + ++STSS++GA+ A  A A  + + +   S +L
Sbjct: 7   VATNLSTAANSTVLRTVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLL 55


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 CSEYLKEKKGEVIKEAVKRLIENGXRNTMASPTSY 271
           C+E +K+KK +V  +A+KRL++       +SP  +
Sbjct: 436 CAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPF 470


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 167 CSEYLKEKKGEVIKEAVKRLIENGXRNTMASPTSY 271
           C+E +K+KK +V  +A+KRL++       +SP  +
Sbjct: 436 CAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPF 470


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
           protein F39H11.3 protein.
          Length = 588

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 295 RFPFHPLSITGRRSHGVPLAVFDQTLHGFLD 203
           + P H   ++  R+ G P+  F  +LH + D
Sbjct: 281 KMPDHQRLLSDARNEGTPIQTFPNSLHRYFD 311


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 YETXIAKCSEYLKEKKGEVIK 208
           +E  + KC+ Y  EK GEV+K
Sbjct: 278 FEGGVEKCALYYPEKLGEVVK 298


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 146 YETXIAKCSEYLKEKKGEVIK 208
           +E  + KC+ Y  EK GEV+K
Sbjct: 279 FEGGVEKCALYYPEKLGEVVK 299


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 80  TLAPRTDDVLAEQLYMSDXIXEYETXIAKCSE 175
           T  PRT  ++ E L M   I  YE    KC E
Sbjct: 375 TYIPRTQKIVEENLAMLPFISAYEPRKDKCVE 406


>Z93785-1|CAB07858.1|  495|Caenorhabditis elegans Hypothetical
           protein W09D10.1 protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 148 VFXNXVTHIQLLRQYVISSWCKCGVRSQRTHGEDEGKQSQSH 23
           +  N   HI  +R   + SW    V++ R  G ++ +Q   H
Sbjct: 58  IHRNLGVHISKVRSVNLDSWTPEQVQTMRVMGNEKARQVYEH 99


>Z66522-1|CAA91406.3|  425|Caenorhabditis elegans Hypothetical
           protein F14E5.3 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 265 QLWTKDGKEIVKXYF 309
           +LW K+GK IVK Y+
Sbjct: 357 ELWKKNGKPIVKFYY 371


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = -3

Query: 237 PFSIRRFTASLITSPFFSFRYSEHLAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAH 58
           PF + RF         F  + S +  +  S +   SL   C AS    +G    L  +AH
Sbjct: 84  PFFMHRFPFGFRAFLVFLLQASSYFVVAYSKNIAMSLAGVCMASLGQGIGEITFLAMAAH 143


>U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform a protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 132 SLIYSCSASTSSVLGASVALEASAHTARTKANKVSLIL 19
           S + + ++STSS++GA+ A  A A  + + +   S +L
Sbjct: 7   SNLAAVASSTSSIIGAAAAAVAEAQPSASPSTSSSFLL 44


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = -3

Query: 237 PFSIRRFTASLITSPFFSFRYSEHLAIXVSYSXMXSLIYSCSASTSSVLGASVALEASAH 58
           PF + RF         F  + S +  +  S +   SL   C AS    +G    L  +AH
Sbjct: 84  PFFMHRFPFGFRAFLVFLLQASSYFVVAYSKNIAMSLAGVCMASLGQGIGEITFLAMAAH 143


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 205 DNLSLLFLQIFRAFGDXGLVFXNXVTHIQLLRQYVISSWCKCGVRSQRTHGEDEG 41
           DN + +  Q FR+ G   +        +       ISSW +C  +     GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,792,523
Number of Sequences: 27780
Number of extensions: 110911
Number of successful extensions: 422
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)